Difference between revisions of "FSU RS07805"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14] * d...")
(Created page with "Category:reaction == Reaction RXN0-1342 == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.99.17 ec-2.4.99.17] * direction: ** left-to-right * common-name: ** trna preq1(...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction KDPGALDOL-RXN ==
+
== Reaction RXN0-1342 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
+
** [http://enzyme.expasy.org/EC/2.4.99.17 ec-2.4.99.17]
−
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
+
** trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[tRNA-with-7-aminomethyl-7-deazaguanine]][c] '''=>''' 1 [[ADENINE]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[tRNAs-containing-epoxy-quenosine]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS07950]]
+
* Gene: [[FSU_RS05575]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS09880]]
+
* Gene: [[FISUC_RS03685]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
+
* [[PWY-6700]], queuosine biosynthesis:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7310]], D-glucosaminate degradation:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7242]], D-fructuronate degradation:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32156 32156]
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.4.99.17}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P44480 P44480]
 
−
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
 
−
** [http://www.uniprot.org/uniprot/P00885 P00885]
 
−
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
 
−
** [http://www.uniprot.org/uniprot/O25729 O25729]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
 
−
** [http://www.uniprot.org/uniprot/O83578 O83578]
 
−
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
 
−
** [http://www.uniprot.org/uniprot/P50846 P50846]
 
−
** [http://www.uniprot.org/uniprot/P38448 P38448]
 
−
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
 
−
** [http://www.uniprot.org/uniprot/P94802 P94802]
 
−
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.14}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase}}
+
{{#set: common-name=trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=genome}}

Revision as of 19:09, 13 January 2021

Reaction RXN0-1342

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6700, queuosine biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS07805&oldid=56515"