Difference between revisions of "FISUC RS08330"

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(Created page with "Category:reaction == Reaction 2OXOGLUTARATEDEH-RXN == * common-name: ** 2-oxoglutarate dehydrogenase complex * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.m9 ec-1.2.1...")
(Created page with "Category:reaction == Reaction THIOREDOXIN-REDUCT-NADPH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9] * direction: ** left-to-right == Reaction fo...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2OXOGLUTARATEDEH-RXN ==
+
== Reaction THIOREDOXIN-REDUCT-NADPH-RXN ==
−
* common-name:
 
−
** 2-oxoglutarate dehydrogenase complex
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.m9 ec-1.2.1.m9]
+
** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
 
−
** 2-oxoglutarate dehydrogenation
 
−
** α-ketoglutarate oxidative decarboxylation
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[SUC-COA]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Red-Thioredoxin]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS05690]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS03090]]
 +
** Category: [[orthology]]
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS13400]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS02405]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TCA]], TCA cycle I (prokaryotic):
+
* [[THIOREDOX-PWY]], thioredoxin pathway:
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
+
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27787 27787]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R08549 R08549]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
−
{{#set: common-name=2-oxoglutarate dehydrogenase complex}}
+
* UNIPROT:
−
{{#set: ec-number=ec-1.2.1.m9}}
+
** [http://www.uniprot.org/uniprot/Q05741 Q05741]
 +
** [http://www.uniprot.org/uniprot/P56431 P56431]
 +
** [http://www.uniprot.org/uniprot/O28718 O28718]
 +
** [http://www.uniprot.org/uniprot/P80880 P80880]
 +
** [http://www.uniprot.org/uniprot/P43496 P43496]
 +
** [http://www.uniprot.org/uniprot/P94284 P94284]
 +
** [http://www.uniprot.org/uniprot/O66790 O66790]
 +
** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
 +
** [http://www.uniprot.org/uniprot/P47348 P47348]
 +
** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
 +
** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
 +
** [http://www.uniprot.org/uniprot/O26804 O26804]
 +
** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
 +
** [http://www.uniprot.org/uniprot/P43788 P43788]
 +
** [http://www.uniprot.org/uniprot/Q58931 Q58931]
 +
** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
 +
** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
 +
** [http://www.uniprot.org/uniprot/P23160 P23160]
 +
** [http://www.uniprot.org/uniprot/P39916 P39916]
 +
** [http://www.uniprot.org/uniprot/Q39242 Q39242]
 +
** [http://www.uniprot.org/uniprot/Q39243 Q39243]
 +
** [http://www.uniprot.org/uniprot/P38816 P38816]
 +
** [http://www.uniprot.org/uniprot/Q25861 Q25861]
 +
** [http://www.uniprot.org/uniprot/P29509 P29509]
 +
** [http://www.uniprot.org/uniprot/P52213 P52213]
 +
** [http://www.uniprot.org/uniprot/Q16881 Q16881]
 +
** [http://www.uniprot.org/uniprot/P75531 P75531]
 +
** [http://www.uniprot.org/uniprot/P74746 P74746]
 +
** [http://www.uniprot.org/uniprot/P46843 P46843]
 +
** [http://www.uniprot.org/uniprot/O54535 O54535]
 +
** [http://www.uniprot.org/uniprot/Q39951 Q39951]
 +
** [http://www.uniprot.org/uniprot/Q92375 Q92375]
 +
** [http://www.uniprot.org/uniprot/P52215 P52215]
 +
** [http://www.uniprot.org/uniprot/P51978 P51978]
 +
</div>
 +
{{#set: ec-number=ec-1.8.1.9}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=2-oxoglutarate dehydrogenation|&alpha;-ketoglutarate oxidative decarboxylation}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=0}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction comment=added for gap-filling}}
+
{{#set: reconstruction source=bifidobacterium|ecoli|plantarum}}
−
{{#set: reconstruction source=reactions_add_gp}}
 

Revision as of 19:09, 13 January 2021

Reaction THIOREDOXIN-REDUCT-NADPH-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • THIOREDOX-PWY, thioredoxin pathway:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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