Difference between revisions of "FISUC RS15310"

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(Created page with "Category:reaction == Reaction INORGPYROPHOSPHAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.1 ec-3.6.1.1] * direction: ** left-to-right * common-name: ** ino...")
(Created page with "Category:reaction == Reaction UDPACYLGLCNACDEACETYL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.108 ec-3.5.1.108] * direction: ** left-to-right == Reaction f...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction INORGPYROPHOSPHAT-RXN ==
+
== Reaction UDPACYLGLCNACDEACETYL-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.1.1 ec-3.6.1.1]
+
** [http://enzyme.expasy.org/EC/3.5.1.108 ec-3.5.1.108]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** inorganic diphosphatase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
+
* 1 [[UDP-OHMYR-ACETYLGLUCOSAMINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ACET]][c] '''+''' 1 [[UDP-OHMYR-GLUCOSAMINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[FSU_RS01735]]
−
* Gene: [[FSU_RS16335]]
+
** Category: [[manual]]
−
** Category: [[orthology]]
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS10935]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS12900]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS03695]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS12850]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FISUC_RS00900]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FSU_RS14825]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS02780]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7805]], (aminomethyl)phosphonate degradation:
+
* [[NAGLIPASYN-PWY]], lipid IVA biosynthesis:
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7807]], glyphosate degradation III:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25210 25210]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04587 R04587]
−
* UNIPROT:
+
{{#set: ec-number=ec-3.5.1.108}}
−
** [http://www.uniprot.org/uniprot/P21616 P21616]
 
−
** [http://www.uniprot.org/uniprot/P31414 P31414]
 
−
** [http://www.uniprot.org/uniprot/P28239 P28239]
 
−
** [http://www.uniprot.org/uniprot/P37980 P37980]
 
−
** [http://www.uniprot.org/uniprot/P84491 P84491]
 
−
** [http://www.uniprot.org/uniprot/O59570 O59570]
 
−
** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
 
−
** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
 
−
** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
 
−
** [http://www.uniprot.org/uniprot/O26363 O26363]
 
−
** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
 
−
** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
 
−
** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
 
−
** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
 
−
** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
 
−
** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
 
−
** [http://www.uniprot.org/uniprot/P47593 P47593]
 
−
** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
 
−
** [http://www.uniprot.org/uniprot/O05724 O05724]
 
−
** [http://www.uniprot.org/uniprot/P19514 P19514]
 
−
** [http://www.uniprot.org/uniprot/P00817 P00817]
 
−
** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
 
−
** [http://www.uniprot.org/uniprot/P13998 P13998]
 
−
** [http://www.uniprot.org/uniprot/P19117 P19117]
 
−
** [http://www.uniprot.org/uniprot/P21216 P21216]
 
−
** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
 
−
** [http://www.uniprot.org/uniprot/P37981 P37981]
 
−
** [http://www.uniprot.org/uniprot/Q43801 Q43801]
 
−
** [http://www.uniprot.org/uniprot/Q43798 Q43798]
 
−
** [http://www.uniprot.org/uniprot/Q43797 Q43797]
 
−
** [http://www.uniprot.org/uniprot/P50308 P50308]
 
−
** [http://www.uniprot.org/uniprot/Q43796 Q43796]
 
−
** [http://www.uniprot.org/uniprot/P93409 P93409]
 
−
** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
 
−
** [http://www.uniprot.org/uniprot/P93410 P93410]
 
−
** [http://www.uniprot.org/uniprot/P75250 P75250]
 
−
** [http://www.uniprot.org/uniprot/Q49071 Q49071]
 
−
** [http://www.uniprot.org/uniprot/O48556 O48556]
 
−
** [http://www.uniprot.org/uniprot/O22537 O22537]
 
−
** [http://www.uniprot.org/uniprot/O82793 O82793]
 
−
** [http://www.uniprot.org/uniprot/O23979 O23979]
 
−
** [http://www.uniprot.org/uniprot/O49949 O49949]
 
−
** [http://www.uniprot.org/uniprot/Q43187 Q43187]
 
−
** [http://www.uniprot.org/uniprot/O22124 O22124]
 
−
** [http://www.uniprot.org/uniprot/Q42650 Q42650]
 
−
** [http://www.uniprot.org/uniprot/Q42651 Q42651]
 
−
** [http://www.uniprot.org/uniprot/O65151 O65151]
 
−
</div>
 
−
{{#set: ec-number=ec-3.6.1.1}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=inorganic diphosphatase}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_147_emile_annot}}
−
{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|ecoli}}
 

Revision as of 19:38, 13 January 2021

Reaction UDPACYLGLCNACDEACETYL-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • NAGLIPASYN-PWY, lipid IVA biosynthesis:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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