Difference between revisions of "FSU RS12885"

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(Created page with "Category:reaction == Reaction KETOBUTFORMLY-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:reaction == Reaction N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.47 ec-3.5.1.47] * direction: ** left-to-right =...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction KETOBUTFORMLY-RXN ==
+
== Reaction N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
+
** [http://enzyme.expasy.org/EC/3.5.1.47 ec-3.5.1.47]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PROPIONYL-COA]][c]
+
* 1 [[CPD-1771]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ACET]][c] '''+''' 1 [[LL-DIAMINOPIMELATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS07120]]
 
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** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS07105]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5437]], L-threonine degradation I:
+
* [[PWY-2941]], L-lysine biosynthesis II:
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** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_ibrahim_23092020]]; tool: [[curation]]; comment: to improve flux
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28055 28055]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20406 20406]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06987 R06987]
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** [http://www.genome.jp/dbget-bin/www_bget?R02733 R02733]
−
{{#set: ec-number=ec-2.3.1}}
+
{{#set: ec-number=ec-3.5.1.47}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=0}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=to improve flux}}
−
{{#set: reconstruction source=bifidobacterium|ecoli|bthetaiotaomicron|faecalibacterium}}
+
{{#set: reconstruction source=reactions_add_ibrahim_23092020}}

Revision as of 19:39, 13 January 2021

Reaction N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2941, L-lysine biosynthesis II:
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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