Difference between revisions of "FISUC RS06965"

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(Created page with "Category:reaction == Reaction MALONYL-COA-ACP-TRANSACYL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http://enzyme.expasy.org/EC/2.3.1.85...")
(Created page with "Category:reaction == Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52] * direction: ** left-to-right * comm...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MALONYL-COA-ACP-TRANSACYL-RXN ==
+
== Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.39 ec-2.3.1.39]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acp s-malonyltransferase
+
** hpch/hpai aldolase/citrate lyase family protein
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACP]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MALONYL-ACP]][c]
+
* 1 [[CPD-804]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[SUCC-S-ALD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS00290]]
+
* Gene: [[FISUC_RS13400]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[FSU_RS15375]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS14095]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS12070]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6799]], fatty acid biosynthesis (plant mitochondria):
+
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-4381]], fatty acid biosynthesis initiation I:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-8012]], mupirocin biosynthesis:
 
−
** '''2''' reactions found over '''26''' reactions in the full pathway
 
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25789 25789]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01647 R01647]
−
* UNIPROT:
+
** [http://www.genome.jp/dbget-bin/www_bget?R01645 R01645]
−
** [http://www.uniprot.org/uniprot/P72391 P72391]
+
{{#set: ec-number=ec-4.1.2.52}}
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
 
−
** [http://www.uniprot.org/uniprot/O34825 O34825]
 
−
** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
 
−
** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
 
−
** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
 
−
** [http://www.uniprot.org/uniprot/O24916 O24916]
 
−
** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
 
−
** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
 
−
** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
 
−
** [http://www.uniprot.org/uniprot/P43712 P43712]
 
−
** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
 
−
** [http://www.uniprot.org/uniprot/O67041 O67041]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
 
−
** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
 
−
** [http://www.uniprot.org/uniprot/P63458 P63458]
 
−
** [http://www.uniprot.org/uniprot/O84241 O84241]
 
−
** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
 
−
** [http://www.uniprot.org/uniprot/P71019 P71019]
 
−
** [http://www.uniprot.org/uniprot/P07149 P07149]
 
−
** [http://www.uniprot.org/uniprot/P73242 P73242]
 
−
** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
 
−
** [http://www.uniprot.org/uniprot/Q54205 Q54205]
 
−
** [http://www.uniprot.org/uniprot/O54437 O54437]
 
−
** [http://www.uniprot.org/uniprot/Q56692 Q56692]
 
−
** [http://www.uniprot.org/uniprot/O13698 O13698]
 
−
** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
 
−
** [http://www.uniprot.org/uniprot/O69476 O69476]
 
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
−
</div>
 
−
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.39|ec-2.3.1.86}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acp s-malonyltransferase}}
+
{{#set: common-name=hpch/hpai aldolase/citrate lyase family protein}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
+
{{#set: reconstruction source=genome}}

Revision as of 19:39, 13 January 2021

Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • hpch/hpai aldolase/citrate lyase family protein

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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