Difference between revisions of "FSU RS10475"

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(Created page with "Category:reaction == Reaction TRANS-RXN-141A == * direction: ** left-to-right == Reaction formula == * 1 CO+2[e] '''=>''' 1 CO+2[c] == Gene(s) associated with this...")
(Created page with "Category:reaction == Reaction COBINPGUANYLYLTRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.62 ec-2.7.7.62] * direction: ** left-to-right == Reaction formu...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction TRANS-RXN-141A ==
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== Reaction COBINPGUANYLYLTRANS-RXN ==
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* ec-number:
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** [http://enzyme.expasy.org/EC/2.7.7.62 ec-2.7.7.62]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CO+2]][e] '''=>''' 1 [[CO+2]][c]
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* 1 [[ADENOSYLCOBINAMIDE-P]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ADENOSYLCOBINAMIDE-GDP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[FSU_RS06185]]
 
** Category: [[orthology]]
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
* Gene: [[FSU_RS10565]]
 
** Category: [[orthology]]
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7972]], adenosylcobinamideGDP salvage from cobinamide II:
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6269]], superpathway of adenosylcobalamin salvage from cobinamide II:
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** '''8''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7962]], adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7971]], adenosylcobinamide-GDP salvage from cobinamide I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[COBALSYN-PWY]], superpathway of adenosylcobalamin salvage from cobinamide I:
 +
** '''7''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* category: [[manual]]; source: [[reactions_add_adenosylcobalamin]]; tool: [[curation]]; comment: added to reach adenosylcobinamide-gdp
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32780 32780]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22712 22712]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R05222 R05222]
 +
{{#set: ec-number=ec-2.7.7.62}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: nb gene associated=2}}
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{{#set: nb gene associated=0}}
{{#set: nb pathway associated=0}}
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{{#set: nb pathway associated=5}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=orthofinder}}
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{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction comment=added to reach adenosylcobinamide-gdp}}
{{#set: reconstruction source=bifidobacterium|ecoli}}
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{{#set: reconstruction source=reactions_add_adenosylcobalamin}}

Revision as of 19:40, 13 January 2021

Reaction COBINPGUANYLYLTRANS-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7972, adenosylcobinamideGDP salvage from cobinamide II:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6269, superpathway of adenosylcobalamin salvage from cobinamide II:
    • 8 reactions found over 6 reactions in the full pathway
  • PWY-7962, adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7971, adenosylcobinamide-GDP salvage from cobinamide I:
    • 5 reactions found over 5 reactions in the full pathway
  • COBALSYN-PWY, superpathway of adenosylcobalamin salvage from cobinamide I:
    • 7 reactions found over 5 reactions in the full pathway

Reconstruction information

External links