Difference between revisions of "FISUC RS01815"

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(Created page with "Category:reaction == Reaction 1.1.1.8-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.8 ec-1.1.1.8] * direction: ** left-to-right == Reaction formula == * 1 DI...")
(Created page with "Category:reaction == Reaction OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.14.99.60 ec-1.14.99.60] * direction: ** left-to-rig...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.1.1.8-RXN ==
+
== Reaction OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.8 ec-1.1.1.8]
+
** [http://enzyme.expasy.org/EC/1.14.99.60 ec-1.14.99.60]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* synonymous:
 +
** 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[Donor-H2]][c] '''+''' 1 [[OCTAPRENYL-METHYL-METHOXY-BENZQ]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[Acceptor]][c] '''+''' 1 [[OCTAPRENYL-METHYL-OH-METHOXY-BENZQ]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS13265]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6118]], glycerol-3-phosphate shuttle:
+
* [[PWY-5870]], ubiquinol-8 biosynthesis (eukaryotic):
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7411]], phosphatidate biosynthesis (yeast):
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered):
 
 
** '''5''' reactions found over '''9''' reactions in the full pathway
 
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6708]], ubiquinol-8 biosynthesis (prokaryotic):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_ibrahim_18092020]]; tool: [[curation]]; comment: to improve flux
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* RHEA:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29404 29404]
−
* UNIPROT:
+
{{#set: ec-number=ec-1.14.99.60}}
−
** [http://www.uniprot.org/uniprot/P13707 P13707]
 
−
** [http://www.uniprot.org/uniprot/P08507 P08507]
 
−
** [http://www.uniprot.org/uniprot/O25614 O25614]
 
−
** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0]
 
−
** [http://www.uniprot.org/uniprot/P43798 P43798]
 
−
** [http://www.uniprot.org/uniprot/O29390 O29390]
 
−
** [http://www.uniprot.org/uniprot/P46919 P46919]
 
−
** [http://www.uniprot.org/uniprot/P07735 P07735]
 
−
** [http://www.uniprot.org/uniprot/P13706 P13706]
 
−
** [http://www.uniprot.org/uniprot/Q00055 Q00055]
 
−
** [http://www.uniprot.org/uniprot/P34517 P34517]
 
−
** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7]
 
−
** [http://www.uniprot.org/uniprot/P21695 P21695]
 
−
** [http://www.uniprot.org/uniprot/P41911 P41911]
 
−
** [http://www.uniprot.org/uniprot/P90593 P90593]
 
−
{{#set: ec-number=ec-1.1.1.8}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: synonymous=2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=0}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction source=plantarum|bthetaiotaomicron|faecalibacterium}}
+
{{#set: reconstruction comment=to improve flux}}
 +
{{#set: reconstruction source=reactions_add_ibrahim_18092020}}

Revision as of 12:03, 15 January 2021

Reaction OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-RXN

  • ec-number:
  • direction:
    • left-to-right
  • synonymous:
    • 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5870, ubiquinol-8 biosynthesis (eukaryotic):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6708, ubiquinol-8 biosynthesis (prokaryotic):
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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