Difference between revisions of "FSU RS13425"

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(Created page with "Category:reaction == Reaction ALDOSE1EPIM-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.3 ec-5.1.3.3] * direction: ** reversible * common-name: ** aldose 1-epi...")
(Created page with "Category:reaction == Reaction DTMPKI-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12] ** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13] ** [ht...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ALDOSE1EPIM-RXN ==
+
== Reaction DTMPKI-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.1.3.3 ec-5.1.3.3]
+
** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]
 +
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 +
** [http://enzyme.expasy.org/EC/2.7.4.9 ec-2.7.4.9]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** aldose 1-epimerase
+
** dtmp kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GALACTOSE]][c] '''<=>''' 1 [[ALPHA-D-GALACTOSE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS03645]]
+
* Gene: [[FISUC_RS07295]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS09210]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
+
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''11''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY66-422]], D-galactose degradation V (Leloir pathway):
+
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28678 28678]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13518 13518]
−
{{#set: ec-number=ec-5.1.3.3}}
+
* LIGAND-RXN:
−
{{#set: direction=reversible}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
−
{{#set: common-name=aldose 1-epimerase}}
+
* UNIPROT:
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
 +
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
 +
** [http://www.uniprot.org/uniprot/P33803 P33803]
 +
** [http://www.uniprot.org/uniprot/P42490 P42490]
 +
** [http://www.uniprot.org/uniprot/P00572 P00572]
 +
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
 +
** [http://www.uniprot.org/uniprot/P68693 P68693]
 +
** [http://www.uniprot.org/uniprot/P23919 P23919]
 +
** [http://www.uniprot.org/uniprot/P36590 P36590]
 +
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
 +
** [http://www.uniprot.org/uniprot/O81650 O81650]
 +
{{#set: ec-number=ec-2.7.4.12|ec-2.7.4.9|ec-2.7.4.13}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=dtmp kinase}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=7}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=bifidobacterium|genome|ecoli|plantarum}}

Revision as of 12:03, 15 January 2021

Reaction DTMPKI-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 11 reactions found over 13 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP:
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-7197, pyrimidine deoxyribonucleotide phosphorylation:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV:
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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