Difference between revisions of "FSU RS12885"

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(Created page with "Category:reaction == Reaction N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.47 ec-3.5.1.47] * direction: ** left-to-right =...")
(Created page with "Category:reaction == Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50] * direction: ** left-to-right == Reac...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction N-ACETYLDIAMINOPIMELATE-DEACETYLASE-RXN ==
+
== Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.1.47 ec-3.5.1.47]
+
** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-1771]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ACET]][c] '''+''' 1 [[LL-DIAMINOPIMELATE]][c]
+
* 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS01045]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2941]], L-lysine biosynthesis II:
+
* [[PWY3DJ-12]], ceramide de novo biosynthesis:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast):
 +
** '''1''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5129]], sphingolipid biosynthesis (plants):
 +
** '''1''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_ibrahim_23092020]]; tool: [[curation]]; comment: to improve flux
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20406 20406]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14762 14762]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02733 R02733]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
−
{{#set: ec-number=ec-3.5.1.47}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P25045 P25045]
 +
** [http://www.uniprot.org/uniprot/O15270 O15270]
 +
** [http://www.uniprot.org/uniprot/P48241 P48241]
 +
** [http://www.uniprot.org/uniprot/Q09925 Q09925]
 +
** [http://www.uniprot.org/uniprot/P40970 P40970]
 +
** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
 +
** [http://www.uniprot.org/uniprot/Q20375 Q20375]
 +
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
 +
{{#set: ec-number=ec-2.3.1.50}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: reconstruction comment=to improve flux}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=reactions_add_ibrahim_23092020}}
+
{{#set: reconstruction source=bthetaiotaomicron}}

Revision as of 12:03, 15 January 2021

Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY3DJ-12, ceramide de novo biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • SPHINGOLIPID-SYN-PWY, sphingolipid biosynthesis (yeast):
    • 1 reactions found over 11 reactions in the full pathway
  • PWY-5129, sphingolipid biosynthesis (plants):
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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