Difference between revisions of "FISUC RS12065"

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(Created page with "Category:reaction == Reaction SPONTPRO-RXN == * direction: ** reversible == Reaction formula == * 1 L-DELTA1-PYRROLINE_5-CARBOXYLATE[c] '''+''' 1 PROTON[c] '''+'''...")
(Created page with "Category:reaction == Reaction O-SUCCHOMOSERLYASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.48 ec-2.5.1.48] * direction: ** reversible == Reaction formula =...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SPONTPRO-RXN ==
+
== Reaction O-SUCCHOMOSERLYASE-RXN ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.48 ec-2.5.1.48]
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
+
* 1 [[CYS]][c] '''+''' 1 [[O-SUCCINYL-L-HOMOSERINE]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS07240]]
 +
** Category: [[orthology]]
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS07525]]
 +
** Category: [[orthology]]
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS02705]]
 +
** Category: [[orthology]]
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine):
−
* [[PWY-4981]], L-proline biosynthesis II (from arginine):
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-801]], homocysteine and cysteine interconversion:
−
* [[PROSYN-PWY]], L-proline biosynthesis I:
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I:
−
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6344]], L-ornithine degradation II (Stickland reaction):
 
−
** '''3''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PROUT-PWY]], L-proline degradation:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7770]], indolmycin biosynthesis:
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6853]], ethylene biosynthesis II (microbes):
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis:
 
 
** '''7''' reactions found over '''7''' reactions in the full pathway
 
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-3341]], L-proline biosynthesis III:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_cmp_emile]]; tool: [[curation]]; comment: present in the annotation part without gene of the emile network.
+
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28237 28237]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20397 20397]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03314 R03314]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03260 R03260]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P0A4K2 P0A4K2]
 +
** [http://www.uniprot.org/uniprot/Q9CEC6 Q9CEC6]
 +
** [http://www.uniprot.org/uniprot/P38675 P38675]
 +
** [http://www.uniprot.org/uniprot/P24601 P24601]
 +
** [http://www.uniprot.org/uniprot/P00935 P00935]
 +
** [http://www.uniprot.org/uniprot/O04981 O04981]
 +
** [http://www.uniprot.org/uniprot/O04982 O04982]
 +
** [http://www.uniprot.org/uniprot/O81334 O81334]
 +
** [http://www.uniprot.org/uniprot/Q79VD9 Q79VD9]
 +
{{#set: ec-number=ec-2.5.1.48}}
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: nb gene associated=0}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: reconstruction comment=present in the annotation part without gene of the emile network.}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=reactions_cmp_emile}}
+
{{#set: reconstruction source=bifidobacterium|faecalibacterium|ecoli}}

Revision as of 12:03, 15 January 2021

Reaction O-SUCCHOMOSERLYASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-I9, L-cysteine biosynthesis VI (from L-methionine):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-801, homocysteine and cysteine interconversion:
    • 2 reactions found over 4 reactions in the full pathway
  • HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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