Difference between revisions of "FSU RS11010"
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(Created page with "Category:reaction == Reaction PYRIMSYN1-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.99.17 ec-4.1.99.17] * direction: ** left-to-right * common-name: ** phospho...") |
(Created page with "Category:reaction == Reaction DIHYDROOROT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2.3] * direction: ** reversible * common-name: ** dihydroorota...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction DIHYDROOROT-RXN == |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2.3] |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** dihydroorotase |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DI-H-OROTATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[FSU_RS03160]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[FISUC_RS05740]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[FISUC_RS01280]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
+ | * Gene: [[FSU_RS07640]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7790]], UMP biosynthesis II: |
− | ** ''' | + | ** '''6''' reactions found over '''6''' reactions in the full pathway |
+ | * [[PWY-7791]], UMP biosynthesis III: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5686]], UMP biosynthesis I: | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24299 24299] |
− | {{#set: ec-number=ec- | + | * LIGAND-RXN: |
− | {{#set: direction= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01993 R01993] |
− | {{#set: common-name= | + | * UNIPROT: |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P08955 P08955] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/P27708 P27708] |
− | {{#set: reconstruction category=annotation}} | + | ** [http://www.uniprot.org/uniprot/Q91437 Q91437] |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://www.uniprot.org/uniprot/Q58885 Q58885] |
+ | ** [http://www.uniprot.org/uniprot/Q9PIN6 Q9PIN6] | ||
+ | ** [http://www.uniprot.org/uniprot/P25995 P25995] | ||
+ | ** [http://www.uniprot.org/uniprot/P20051 P20051] | ||
+ | ** [http://www.uniprot.org/uniprot/P06204 P06204] | ||
+ | ** [http://www.uniprot.org/uniprot/P05020 P05020] | ||
+ | ** [http://www.uniprot.org/uniprot/P31301 P31301] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNA0 Q9PNA0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVD6 Q9JVD6] | ||
+ | ** [http://www.uniprot.org/uniprot/P46538 P46538] | ||
+ | ** [http://www.uniprot.org/uniprot/P20054 P20054] | ||
+ | ** [http://www.uniprot.org/uniprot/P05990 P05990] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06950 Q06950] | ||
+ | ** [http://www.uniprot.org/uniprot/P72934 P72934] | ||
+ | ** [http://www.uniprot.org/uniprot/P74438 P74438] | ||
+ | ** [http://www.uniprot.org/uniprot/O04904 O04904] | ||
+ | ** [http://www.uniprot.org/uniprot/P72170 P72170] | ||
+ | ** [http://www.uniprot.org/uniprot/O76138 O76138] | ||
+ | ** [http://www.uniprot.org/uniprot/O27199 O27199] | ||
+ | ** [http://www.uniprot.org/uniprot/P48795 P48795] | ||
+ | </div> | ||
+ | {{#set: ec-number=ec-3.5.2.3}} | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=dihydroorotase}} | ||
+ | {{#set: nb gene associated=4}} | ||
+ | {{#set: nb pathway associated=3}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pathwaytools|orthofinder}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=genome}} | + | {{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|ecoli}} |
Revision as of 12:03, 15 January 2021
Contents
Reaction DIHYDROOROT-RXN
- ec-number:
- direction:
- reversible
- common-name:
- dihydroorotase
Reaction formula
- 1 DI-H-OROTATE[c] + 1 WATER[c] <=> 1 CARBAMYUL-L-ASPARTATE[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: FSU_RS03160
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: orthology
- Source: bifidobacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: faecalibacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: plantarum, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: FISUC_RS05740
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: FISUC_RS01280
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: annotation
- Gene: FSU_RS07640
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7790, UMP biosynthesis II:
- 6 reactions found over 6 reactions in the full pathway
- PWY-7791, UMP biosynthesis III:
- 5 reactions found over 6 reactions in the full pathway
- PWY-5686, UMP biosynthesis I:
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: bifidobacterium; tool: orthofinder; comment: n.a
- category: orthology; source: faecalibacterium; tool: orthofinder; comment: n.a
- category: orthology; source: ecoli; tool: orthofinder; comment: n.a
- category: orthology; source: plantarum; tool: orthofinder; comment: n.a
- category: annotation; source: genome; tool: pathwaytools; comment: n.a
External links