Difference between revisions of "FSU RS04330"
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(Created page with "Category:reaction == Reaction RXN-9531 == * common-name: ** 3-oxo-dodecanoyl-[acyl-carrier protein] synthase ** beta-ketoacyl-acp synthase ii * ec-number: ** [http://enzym...") |
(Created page with "Category:reaction == Reaction LUMAZINESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78] * direction: ** left-to-right * common-name: ** 6,7-dim...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction LUMAZINESYN-RXN == |
− | |||
− | |||
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78] |
− | |||
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** 6,7-dimethyl-8-ribityllumazine synthase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[FSU_RS15715]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** Source: [[ | + | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a |
− | + | * Gene: [[FISUC_RS13750]] | |
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[FSU_RS15725]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): |
− | ** ''' | + | ** '''9''' reactions found over '''9''' reactions in the full pathway |
+ | * [[PWY-6168]], flavin biosynthesis III (fungi): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6167]], flavin biosynthesis II (archaea): | ||
+ | ** '''5''' reactions found over '''10''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | + | * LIGAND-RXN: | |
− | {{#set: ec-number=ec-2. | + | ** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457] |
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152] | ||
+ | {{#set: ec-number=ec-2.5.1.78}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=annotation|orthology}} |
+ | {{#set: reconstruction tool=pathwaytools|orthofinder}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=genome}} | + | {{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}} |
Revision as of 12:03, 15 January 2021
Contents
Reaction LUMAZINESYN-RXN
- ec-number:
- direction:
- left-to-right
- common-name:
- 6,7-dimethyl-8-ribityllumazine synthase
Reaction formula
- 1 AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE[c] + 1 DIHYDROXY-BUTANONE-P[c] => 1 DIMETHYL-D-RIBITYL-LUMAZINE[c] + 1 PROTON[c] + 1 Pi[c] + 2 WATER[c]
Gene(s) associated with this reaction
- Gene: FSU_RS15715
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: FISUC_RS13750
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: FSU_RS15725
- Category: annotation
- Source: genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: bthetaiotaomicron, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
- 9 reactions found over 9 reactions in the full pathway
- PWY-6168, flavin biosynthesis III (fungi):
- 7 reactions found over 9 reactions in the full pathway
- PWY-6167, flavin biosynthesis II (archaea):
- 5 reactions found over 10 reactions in the full pathway
Reconstruction information
- category: orthology; source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- category: orthology; source: ecoli; tool: orthofinder; comment: n.a
- category: annotation; source: genome; tool: pathwaytools; comment: n.a
External links