Difference between revisions of "FSU RS10475"

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(Created page with "Category:reaction == Reaction COBINPGUANYLYLTRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.62 ec-2.7.7.62] * direction: ** left-to-right == Reaction formu...")
(Created page with "Category:reaction == Reaction 4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.23 ec-2.6.1.23] * direction: ** reversible == R...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction COBINPGUANYLYLTRANS-RXN ==
+
== Reaction 4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.62 ec-2.7.7.62]
+
** [http://enzyme.expasy.org/EC/2.6.1.23 ec-2.6.1.23]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADENOSYLCOBINAMIDE-P]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ADENOSYLCOBINAMIDE-GDP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ERYTHRO-4-HYDROXY-GLUTAMATE]][c] '''<=>''' 1 [[CPD-15015]][c] '''+''' 1 [[GLT]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS14145]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS02470]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS13690]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7972]], adenosylcobinamideGDP salvage from cobinamide II:
+
* [[HYDROXYPRODEG-PWY]], trans-4-hydroxy-L-proline degradation I:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6269]], superpathway of adenosylcobalamin salvage from cobinamide II:
 
−
** '''8''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7962]], adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7971]], adenosylcobinamide-GDP salvage from cobinamide I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[COBALSYN-PWY]], superpathway of adenosylcobalamin salvage from cobinamide I:
 
−
** '''7''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_adenosylcobalamin]]; tool: [[curation]]; comment: added to reach adenosylcobinamide-gdp
+
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22712 22712]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05222 R05222]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03266 R03266]
−
{{#set: ec-number=ec-2.7.7.62}}
+
{{#set: ec-number=ec-2.6.1.23}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: nb gene associated=0}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: reconstruction comment=added to reach adenosylcobinamide-gdp}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=reactions_add_adenosylcobalamin}}
+
{{#set: reconstruction source=plantarum|bthetaiotaomicron|faecalibacterium}}

Revision as of 12:03, 15 January 2021

Reaction 4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HYDROXYPRODEG-PWY, trans-4-hydroxy-L-proline degradation I:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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