Difference between revisions of "FSU RS13425"

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(Created page with "Category:reaction == Reaction DTMPKI-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12] ** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13] ** [ht...")
(Created page with "Category:reaction == Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52] * direction: ** left-to-right * comm...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DTMPKI-RXN ==
+
== Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]
+
** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52]
−
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 
−
** [http://enzyme.expasy.org/EC/2.7.4.9 ec-2.7.4.9]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dtmp kinase
+
** hpch/hpai aldolase/citrate lyase family protein
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
+
* 1 [[CPD-804]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[SUCC-S-ALD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS07295]]
+
* Gene: [[FISUC_RS13400]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS09210]]
+
* Gene: [[FSU_RS15375]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
+
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation:
−
** '''11''' reactions found over '''13''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13518 13518]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25789 25789]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01647 R01647]
−
* UNIPROT:
+
** [http://www.genome.jp/dbget-bin/www_bget?R01645 R01645]
−
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
+
{{#set: ec-number=ec-4.1.2.52}}
−
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
 
−
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
 
−
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
 
−
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
 
−
** [http://www.uniprot.org/uniprot/P33803 P33803]
 
−
** [http://www.uniprot.org/uniprot/P42490 P42490]
 
−
** [http://www.uniprot.org/uniprot/P00572 P00572]
 
−
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
 
−
** [http://www.uniprot.org/uniprot/P68693 P68693]
 
−
** [http://www.uniprot.org/uniprot/P23919 P23919]
 
−
** [http://www.uniprot.org/uniprot/P36590 P36590]
 
−
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
 
−
** [http://www.uniprot.org/uniprot/O81650 O81650]
 
−
{{#set: ec-number=ec-2.7.4.12|ec-2.7.4.9|ec-2.7.4.13}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dtmp kinase}}
+
{{#set: common-name=hpch/hpai aldolase/citrate lyase family protein}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bifidobacterium|genome|ecoli|plantarum}}
+
{{#set: reconstruction source=genome}}

Revision as of 16:01, 18 March 2021

Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • hpch/hpai aldolase/citrate lyase family protein

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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