Difference between revisions of "FISUC RS06230"

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(Created page with "Category:reaction == Reaction RXN-11839 == * ec-number: ** [http://enzyme.expasy.org/EC/5.4.99.25 ec-5.4.99.25] * direction: ** left-to-right * common-name: ** trna pseudo...")
(Created page with "Category:reaction == Reaction COBINPGUANYLYLTRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.62 ec-2.7.7.62] * direction: ** left-to-right == Reaction formu...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-11839 ==
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== Reaction COBINPGUANYLYLTRANS-RXN ==
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/5.4.99.25 ec-5.4.99.25]
+
** [http://enzyme.expasy.org/EC/2.7.7.62 ec-2.7.7.62]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** trna pseudouridine(55) synthase trub
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[tRNA-uridine55]][c] '''=>''' 1 [[tRNA-pseudouridine55]][c]
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* 1 [[ADENOSYLCOBINAMIDE-P]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ADENOSYLCOBINAMIDE-GDP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[FSU_RS13520]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[FISUC_RS11555]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7962]], adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7971]], adenosylcobinamide-GDP salvage from cobinamide I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[COBALSYN-PWY]], superpathway of adenosylcobalamin salvage from cobinamide I:
 +
** '''7''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7972]], adenosylcobinamideGDP salvage from cobinamide II:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6269]], superpathway of adenosylcobalamin salvage from cobinamide II:
 +
** '''7''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_adenosylcobalamin]]; tool: [[curation]]; comment: added to reach adenosylcobinamide-gdp
 
== External links  ==
 
== External links  ==
{{#set: ec-number=ec-5.4.99.25}}
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* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22712 22712]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05222 R05222]
 +
{{#set: ec-number=ec-2.7.7.62}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=trna pseudouridine(55) synthase trub}}
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{{#set: nb gene associated=0}}
{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=5}}
{{#set: nb pathway associated=0}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=added to reach adenosylcobinamide-gdp}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_adenosylcobalamin}}
{{#set: reconstruction source=genome}}
 

Revision as of 16:01, 18 March 2021

Reaction COBINPGUANYLYLTRANS-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7962, adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7971, adenosylcobinamide-GDP salvage from cobinamide I:
    • 5 reactions found over 5 reactions in the full pathway
  • COBALSYN-PWY, superpathway of adenosylcobalamin salvage from cobinamide I:
    • 7 reactions found over 5 reactions in the full pathway
  • PWY-7972, adenosylcobinamideGDP salvage from cobinamide II:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6269, superpathway of adenosylcobalamin salvage from cobinamide II:
    • 7 reactions found over 6 reactions in the full pathway

Reconstruction information

External links