Difference between revisions of "FSU RS12885"

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(Created page with "Category:reaction == Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50] * direction: ** left-to-right == Reac...")
(Created page with "Category:reaction == Reaction 4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.23 ec-2.6.1.23] * direction: ** reversible == R...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN ==
+
== Reaction 4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50]
+
** [http://enzyme.expasy.org/EC/2.6.1.23 ec-2.6.1.23]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ERYTHRO-4-HYDROXY-GLUTAMATE]][c] '''<=>''' 1 [[CPD-15015]][c] '''+''' 1 [[GLT]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS01045]]
+
* Gene: [[FSU_RS14145]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS02470]]
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS13690]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY3DJ-12]], ceramide de novo biosynthesis:
+
* [[HYDROXYPRODEG-PWY]], trans-4-hydroxy-L-proline degradation I:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast):
 
−
** '''1''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5129]], sphingolipid biosynthesis (plants):
 
−
** '''1''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14762 14762]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03266 R03266]
−
* UNIPROT:
+
{{#set: ec-number=ec-2.6.1.23}}
−
** [http://www.uniprot.org/uniprot/P25045 P25045]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/O15270 O15270]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/P48241 P48241]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q09925 Q09925]
 
−
** [http://www.uniprot.org/uniprot/P40970 P40970]
 
−
** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
 
−
** [http://www.uniprot.org/uniprot/Q20375 Q20375]
 
−
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
 
−
{{#set: ec-number=ec-2.3.1.50}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=3}}
 
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=orthofinder}}
 
{{#set: reconstruction tool=orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=bthetaiotaomicron}}
+
{{#set: reconstruction source=bthetaiotaomicron|plantarum|faecalibacterium}}

Revision as of 16:01, 18 March 2021

Reaction 4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HYDROXYPRODEG-PWY, trans-4-hydroxy-L-proline degradation I:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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