Difference between revisions of "FSU RS01445"

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(Created page with "Category:reaction == Reaction ASPARTATE--TRNA-LIGASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12] * direction: ** left-to-right * common-name:...")
(Created page with "Category:reaction == Reaction RXN-11135 == * ec-number: ** [http://enzyme.expasy.org/EC/5.6.2.d ec-5.6.2.d] * direction: ** left-to-right == Reaction formula == * 1 [[ATP]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ASPARTATE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-11135 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12]
+
** [http://enzyme.expasy.org/EC/5.6.2.d ec-5.6.2.d]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** aspartate--trna ligase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Supercoiled-Duplex-DNAs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[Single-Stranded-DNAs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS00430]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** Category: [[annotation]]
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* Gene: [[FSU_RS10840]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[manual]]
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* Gene: [[FISUC_RS14240]]
+
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
−
** Category: [[annotation]]
+
* Gene: [[FSU_RS12975]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[manual]]
 +
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
* Gene: [[FSU_RS05375]]
 +
** Category: [[manual]]
 +
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
* Gene: [[FSU_RS14745]]
 +
** Category: [[manual]]
 +
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
* Gene: [[FSU_RS07655]]
 +
** Category: [[manual]]
 +
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
* Gene: [[FSU_RS03265]]
 +
** Category: [[manual]]
 +
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
* Gene: [[FSU_RS05130]]
 +
** Category: [[manual]]
 +
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the annotation part of the emile network.
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: present in the annotation part of the emile network.
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: ec-number=ec-5.6.2.d}}
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19650 19650]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P56459 P56459]
 
−
** [http://www.uniprot.org/uniprot/O26328 O26328]
 
−
** [http://www.uniprot.org/uniprot/O83950 O83950]
 
−
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
 
−
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
 
−
** [http://www.uniprot.org/uniprot/O32038 O32038]
 
−
** [http://www.uniprot.org/uniprot/O67589 O67589]
 
−
** [http://www.uniprot.org/uniprot/P43817 P43817]
 
−
** [http://www.uniprot.org/uniprot/O51402 O51402]
 
−
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
 
−
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
 
−
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
 
−
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
 
−
** [http://www.uniprot.org/uniprot/O58776 O58776]
 
−
** [http://www.uniprot.org/uniprot/O84546 O84546]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
 
−
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
 
−
** [http://www.uniprot.org/uniprot/P47282 P47282]
 
−
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
 
−
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
 
−
** [http://www.uniprot.org/uniprot/P36429 P36429]
 
−
** [http://www.uniprot.org/uniprot/P75068 P75068]
 
−
** [http://www.uniprot.org/uniprot/P73851 P73851]
 
−
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
 
−
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 
−
** [http://www.uniprot.org/uniprot/P04802 P04802]
 
−
** [http://www.uniprot.org/uniprot/P15179 P15179]
 
−
** [http://www.uniprot.org/uniprot/P21889 P21889]
 
−
** [http://www.uniprot.org/uniprot/P14868 P14868]
 
−
** [http://www.uniprot.org/uniprot/P15178 P15178]
 
−
** [http://www.uniprot.org/uniprot/O81892 O81892]
 
−
** [http://www.uniprot.org/uniprot/O74407 O74407]
 
−
** [http://www.uniprot.org/uniprot/O07683 O07683]
 
−
</div>
 
−
{{#set: ec-number=ec-6.1.1.12}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=aspartate--trna ligase}}
+
{{#set: nb gene associated=7}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=present in the annotation part of the emile network.}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_147_emile_annot}}
−
{{#set: reconstruction source=genome}}
 

Revision as of 16:01, 18 March 2021

Reaction RXN-11135

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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