Difference between revisions of "FSU RS04330"

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(Created page with "Category:reaction == Reaction LUMAZINESYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78] * direction: ** left-to-right * common-name: ** 6,7-dim...")
(Created page with "Category:reaction == Reaction O-SUCCINYLBENZOATE-COA-SYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.113 ec-4.2.1.113] * direction: ** left-to-right == React...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction LUMAZINESYN-RXN ==
+
== Reaction O-SUCCINYLBENZOATE-COA-SYN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78]
+
** [http://enzyme.expasy.org/EC/4.2.1.113 ec-4.2.1.113]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 6,7-dimethyl-8-ribityllumazine synthase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[CPD-9923]][c] '''=>''' 1 [[O-SUCCINYLBENZOATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS15715]]
 
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** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS13750]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS15725]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
+
* [[PWY-5837]], 2-carboxy-1,4-naphthoquinol biosynthesis:
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** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6168]], flavin biosynthesis III (fungi):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6167]], flavin biosynthesis II (archaea):
 
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_gp2]]; tool: [[curation]]; comment: added for gap-filling
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10197 10197]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04031 R04031]
−
* RHEA:
+
{{#set: ec-number=ec-4.2.1.113}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152]
 
−
{{#set: ec-number=ec-2.5.1.78}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: reconstruction comment=added for gap-filling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_gp2}}
−
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}
 

Revision as of 16:01, 18 March 2021

Reaction O-SUCCINYLBENZOATE-COA-SYN-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5837, 2-carboxy-1,4-naphthoquinol biosynthesis:
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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