Difference between revisions of "FSU RS06065"

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(Created page with "Category:reaction == Reaction 3.2.1.78-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.2.1.78 ec-3.2.1.78] * direction: ** left-to-right * common-name: ** mannan end...")
(Created page with "Category:reaction == Reaction DUTP-PYROP-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23] ** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9] * di...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.78-RXN ==
+
== Reaction DUTP-PYROP-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.78 ec-3.2.1.78]
+
** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23]
 +
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** mannan endo-1,4-beta-mannosidase
+
** nucleoside triphosphate pyrophosphohydrolase
 +
** dutp diphosphatase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-4-Mannan]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[Short-Mannan]][c]
+
* 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS08440]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FISUC_RS00035]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS02370]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS10375]]
+
* Gene: [[FSU_RS04260]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS01905]]
 +
** Category: [[annotation]]
 +
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7456]], &beta;-(1,4)-mannan degradation:
+
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''11''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10249 10249]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16699 P16699]
+
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
−
** [http://www.uniprot.org/uniprot/P22533 P22533]
+
** [http://www.uniprot.org/uniprot/P33316 P33316]
−
** [http://www.uniprot.org/uniprot/O66185 O66185]
+
** [http://www.uniprot.org/uniprot/O15923 O15923]
−
** [http://www.uniprot.org/uniprot/O48540 O48540]
+
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
−
** [http://www.uniprot.org/uniprot/Q9M0H6 Q9M0H6]
+
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
−
** [http://www.uniprot.org/uniprot/P49425 P49425]
+
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
−
{{#set: ec-number=ec-3.2.1.78}}
+
** [http://www.uniprot.org/uniprot/P43792 P43792]
 +
** [http://www.uniprot.org/uniprot/P32518 P32518]
 +
** [http://www.uniprot.org/uniprot/P68635 P68635]
 +
** [http://www.uniprot.org/uniprot/P68634 P68634]
 +
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 +
** [http://www.uniprot.org/uniprot/P03195 P03195]
 +
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 +
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 +
** [http://www.uniprot.org/uniprot/P33317 P33317]
 +
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 +
** [http://www.uniprot.org/uniprot/P43058 P43058]
 +
** [http://www.uniprot.org/uniprot/O80091 O80091]
 +
** [http://www.uniprot.org/uniprot/O36404 O36404]
 +
** [http://www.uniprot.org/uniprot/O41033 O41033]
 +
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 +
** [http://www.uniprot.org/uniprot/O39251 O39251]
 +
** [http://www.uniprot.org/uniprot/O01934 O01934]
 +
** [http://www.uniprot.org/uniprot/P10234 P10234]
 +
** [http://www.uniprot.org/uniprot/P06968 P06968]
 +
** [http://www.uniprot.org/uniprot/P09254 P09254]
 +
** [http://www.uniprot.org/uniprot/P28892 P28892]
 +
** [http://www.uniprot.org/uniprot/P28893 P28893]
 +
</div>
 +
{{#set: ec-number=ec-3.6.1.23|ec-3.6.1.9}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=mannan endo-1,4-beta-mannosidase}}
+
{{#set: common-name=nucleoside triphosphate pyrophosphohydrolase|dutp diphosphatase}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome}}
+
{{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}

Revision as of 16:01, 18 March 2021

Reaction DUTP-PYROP-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • nucleoside triphosphate pyrophosphohydrolase
    • dutp diphosphatase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
    • 11 reactions found over 13 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II:
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III:
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I:
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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