Difference between revisions of "FSU RS01020"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DIOHBUTANONEPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.99.12 ec-4.1.99.12] * direction: ** left-to-right * common-name: **...")
(Created page with "Category:gene == Gene FISUC_RS02545 == * transcription-direction: ** negative * centisome-position: ** 15.246543 * left-end-position: ** 585869 * right-end-position: *...")
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction DIOHBUTANONEPSYN-RXN ==
+
== Gene FISUC_RS02545 ==
−
* ec-number:
+
* transcription-direction:
−
** [http://enzyme.expasy.org/EC/4.1.99.12 ec-4.1.99.12]
+
** negative
−
* direction:
+
* centisome-position:
−
** left-to-right
+
** 15.246543   
−
* common-name:
+
* left-end-position:
−
** bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii
+
** 585869
−
== Reaction formula ==
+
* right-end-position:
−
* 1 [[RIBULOSE-5P]][c] '''=>''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c]
+
** 586771
−
== Gene(s) associated with this reaction  ==
+
== Organism(s) associated with this gene  ==
−
* Gene: [[FISUC_RS13745]]
+
* [[fibrobacter_23042021]]
 +
== Reaction(s) associated ==
 +
* [[ASPARTOACYLASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS15720]]
+
* [[RXN-13680]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
{{#set: transcription-direction=negative}}
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: centisome-position=15.246543    }}
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: left-end-position=585869}}
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: right-end-position=586771}}
−
== Pathway(s)  ==
+
{{#set: organism associated=fibrobacter_23042021}}
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
+
{{#set: nb reaction associated=2}}
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6168]], flavin biosynthesis III (fungi):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6167]], flavin biosynthesis II (archaea):
 
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
−
== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
== External links  ==
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18458 18458]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07281 R07281]
 
−
{{#set: ec-number=ec-4.1.99.12}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=bthetaiotaomicron|ecoli|plantarum|genome}}
 

Revision as of 18:10, 26 April 2021

Gene FISUC_RS02545

  • transcription-direction:
    • negative
  • centisome-position:
    • 15.246543
  • left-end-position:
    • 585869
  • right-end-position:
    • 586771

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS01020&oldid=78016"