Difference between revisions of "FSU RS08165"

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(Created page with "Category:reaction == Reaction RXN0-302 == * ec-number: ** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12] * direction: ** left-to-right * common-name: ** 2-c-methyl-d-e...")
(Created page with "Category:gene == Gene FISUC_RS04750 == * transcription-direction: ** positive * centisome-position: ** 30.609516 * left-end-position: ** 1176212 * right-end-position:...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN0-302 ==
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== Gene FISUC_RS04750 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 30.609516   
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* common-name:
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* left-end-position:
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** 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
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** 1176212
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== Reaction formula ==
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* right-end-position:
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* 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c]
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** 1177924
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS10755]]
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* [[fibrobacter_23042021]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[ACYLCOADEHYDROG-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS12720]]
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* [[RXN-17775]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-17779]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[RXN-17783]]
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== Pathway(s)  ==
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** Category: [[annotation]]
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* [[PWY-7560]], methylerythritol phosphate pathway II:
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-17784]]
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
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** Category: [[annotation]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[RXN-17788]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* [[RXN-17792]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* RHEA:
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* [[RXN-17796]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23865 23865]
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** Category: [[annotation]]
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* LIGAND-RXN:
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
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</div>
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{{#set: ec-number=ec-4.6.1.12}}
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== Pathway(s) associated ==
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{{#set: direction=left-to-right}}
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* [[FAO-PWY]]
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{{#set: common-name=2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase}}
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** '''2''' reactions found over '''7''' reactions in the full pathway
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{{#set: nb gene associated=2}}
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{{#set: transcription-direction=positive}}
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{{#set: nb pathway associated=2}}
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{{#set: centisome-position=30.609516    }}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: left-end-position=1176212}}
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
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{{#set: right-end-position=1177924}}
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{{#set: reconstruction comment=n.a}}
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{{#set: organism associated=fibrobacter_23042021}}
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{{#set: reconstruction source=bthetaiotaomicron|genome|bifidobacterium|ecoli}}
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{{#set: nb reaction associated=8}}
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{{#set: nb pathway associated=1}}

Revision as of 18:10, 26 April 2021

Gene FISUC_RS04750

  • transcription-direction:
    • positive
  • centisome-position:
    • 30.609516
  • left-end-position:
    • 1176212
  • right-end-position:
    • 1177924

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FAO-PWY
    • 2 reactions found over 7 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS08165&oldid=78098"