Difference between revisions of "FSU RS14305"

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(Created page with "Category:reaction == Reaction ACONITATEHYDR-RXN == * common-name: ** cis-aconitate hydratase ** aconitate hydratase * direction: ** reversible == Reaction formula == * 1 [...")
(Created page with "Category:gene == Gene FISUC_RS01950 == * transcription-direction: ** negative * centisome-position: ** 11.399703 * left-end-position: ** 438049 * right-end-position: *...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ACONITATEHYDR-RXN ==
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== Gene FISUC_RS01950 ==
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* common-name:
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* transcription-direction:
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** cis-aconitate hydratase
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** negative
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** aconitate hydratase
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* centisome-position:
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* direction:
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** 11.399703   
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** reversible
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* left-end-position:
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== Reaction formula ==
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** 438049
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* 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
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* right-end-position:
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== Gene(s) associated with this reaction  ==
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** 439686
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* Gene: [[FISUC_RS00920]]
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== Organism(s) associated with this gene  ==
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* [[fibrobacter_23042021]]
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== Reaction(s) associated ==
 +
* [[FUMHYDR-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS02800]]
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== Pathway(s) associated ==
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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== Pathway(s) ==
 
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-7254]], TCA cycle VII (acetate-producers):
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* [[FERMENTATION-PWY]]
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** '''14''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-7384]]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6728]]
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** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-561]]
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** '''6''' reactions found over '''4''' reactions in the full pathway
 +
* [[P42-PWY]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[P23-PWY]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5392]]
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** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[P108-PWY]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[TCA]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]]
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi):
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* [[PWY-5690]]
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals):
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* [[PWY66-398]]
 
** '''7''' reactions found over '''11''' reactions in the full pathway
 
** '''7''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
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* [[PWY-5913]]
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
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* [[REDCITCYC]]
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
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* [[PWY-6969]]
 
** '''9''' reactions found over '''12''' reactions in the full pathway
 
** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
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* [[P105-PWY]]
 
** '''8''' reactions found over '''11''' reactions in the full pathway
 
** '''8''' reactions found over '''11''' reactions in the full pathway
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* [[FERMENTATION-PWY]], mixed acid fermentation:
 
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** '''14''' reactions found over '''16''' reactions in the full pathway
 
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 
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** '''4''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6549]], L-glutamine biosynthesis III:
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6728]], methylaspartate cycle:
 
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** '''9''' reactions found over '''19''' reactions in the full pathway
 
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* [[P23-PWY]], reductive TCA cycle I:
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-5392]], reductive TCA cycle II:
 
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** '''8''' reactions found over '''12''' reactions in the full pathway
 
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* [[TCA]], TCA cycle I (prokaryotic):
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
</div>
 
</div>
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== Reconstruction information  ==
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{{#set: transcription-direction=negative}}
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: centisome-position=11.399703    }}
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== External links  ==
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{{#set: left-end-position=438049}}
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* RHEA:
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{{#set: right-end-position=439686}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
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{{#set: organism associated=fibrobacter_23042021}}
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* LIGAND-RXN:
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{{#set: nb reaction associated=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
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{{#set: nb pathway associated=16}}
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{{#set: common-name=cis-aconitate hydratase|aconitate hydratase}}
 
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{{#set: direction=reversible}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=15}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome}}
 

Revision as of 18:11, 26 April 2021

Gene FISUC_RS01950

  • transcription-direction:
    • negative
  • centisome-position:
    • 11.399703
  • left-end-position:
    • 438049
  • right-end-position:
    • 439686

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • PWY-7384
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-561
    • 6 reactions found over 4 reactions in the full pathway
  • P42-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway
  • P108-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS14305&oldid=78395"