Difference between revisions of "FISUC RS02120"

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(Created page with "Category:reaction == Reaction PPPGPPHYDRO-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.40 ec-3.6.1.40] * direction: ** left-to-right == Reaction formula == *...")
(Created page with "Category:gene == Gene FISUC_RS02120 == * transcription-direction: ** negative * centisome-position: ** 12.788021 * left-end-position: ** 491397 * right-end-position: *...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction PPPGPPHYDRO-RXN ==
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== Gene FISUC_RS02120 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/3.6.1.40 ec-3.6.1.40]
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** negative
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* direction:
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* centisome-position:
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** left-to-right
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** 12.788021   
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== Reaction formula ==
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* left-end-position:
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* 1 [[GDP-TP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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** 491397
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== Gene(s) associated with this reaction ==
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* right-end-position:
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* Gene: [[FISUC_RS10935]]
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** 493064
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** Category: [[orthology]]
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== Organism(s) associated with this gene ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[fibrobacter_23042021]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Reaction(s) associated ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[GLUTAMINE--TRNA-LIGASE-RXN]]
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* Gene: [[FSU_RS16335]]
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** Category: [[annotation]]
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** Category: [[orthology]]
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Pathway(s) associated ==
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[TRNA-CHARGING-PWY]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''21''' reactions found over '''21''' reactions in the full pathway
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* Gene: [[FSU_RS12900]]
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{{#set: transcription-direction=negative}}
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** Category: [[orthology]]
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{{#set: centisome-position=12.788021    }}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: left-end-position=491397}}
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: right-end-position=493064}}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: organism associated=fibrobacter_23042021}}
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== Pathway(s) ==
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{{#set: nb reaction associated=1}}
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* [[PPGPPMET-PWY]], ppGpp biosynthesis:
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13074 13074]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03409 R03409]
 
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{{#set: ec-number=ec-3.6.1.40}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bthetaiotaomicron|ecoli|bifidobacterium}}
 

Revision as of 18:11, 26 April 2021

Gene FISUC_RS02120

  • transcription-direction:
    • negative
  • centisome-position:
    • 12.788021
  • left-end-position:
    • 491397
  • right-end-position:
    • 493064

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS02120&oldid=78489"