Difference between revisions of "FISUC RS07880"

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(Created page with "Category:reaction == Reaction TRYPTOPHAN-AMINOTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.27 ec-2.6.1.27] * direction: ** reversible == Reaction...")
(Created page with "Category:gene == Gene FISUC_RS03085 == * transcription-direction: ** positive * centisome-position: ** 18.894274 * left-end-position: ** 726038 * right-end-position: *...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction TRYPTOPHAN-AMINOTRANSFERASE-RXN ==
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== Gene FISUC_RS03085 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.6.1.27 ec-2.6.1.27]
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** positive
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* direction:
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* centisome-position:
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** reversible
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** 18.894274   
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== Reaction formula ==
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* left-end-position:
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[TRP]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[INDOLE_PYRUVATE]][c]
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** 726038
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== Gene(s) associated with this reaction ==
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* right-end-position:
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* Gene: [[FSU_RS14145]]
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** 727738
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** Category: [[orthology]]
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== Organism(s) associated with this gene ==
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[fibrobacter_23042021]]
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== Pathway(s) ==
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== Reaction(s) associated ==
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* [[PWY-8017]], L-tryptophan degradation XIII (Stickland reaction):
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* [[RXN0-5359]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-5081]], L-tryptophan degradation VIII (to tryptophol):
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*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''2''' reactions found over '''4''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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* [[TRPKYNCAT-PWY]], L-tryptophan degradation IV (via indole-3-lactate):
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{{#set: centisome-position=18.894274    }}
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** '''1''' reactions found over '''2''' reactions in the full pathway
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{{#set: left-end-position=726038}}
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* [[TRPIAACAT-PWY]], indole-3-acetate biosynthesis VI (bacteria):
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{{#set: right-end-position=727738}}
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** '''1''' reactions found over '''3''' reactions in the full pathway
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{{#set: organism associated=fibrobacter_23042021}}
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* [[PWY-581]], indole-3-acetate biosynthesis II:
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{{#set: nb reaction associated=1}}
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** '''2''' reactions found over '''12''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14096 14096]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00684 R00684]
 
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{{#set: ec-number=ec-2.6.1.27}}
 
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{{#set: direction=reversible}}
 
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=plantarum}}
 

Revision as of 18:11, 26 April 2021

Gene FISUC_RS03085

  • transcription-direction:
    • positive
  • centisome-position:
    • 18.894274
  • left-end-position:
    • 726038
  • right-end-position:
    • 727738

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS07880&oldid=78504"