Difference between revisions of "FSU RS06065"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DUTP-PYROP-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23] ** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9] * di...")
(Created page with "Category:gene == Gene FSU_RS14755 == * common-name: ** kdsb * transcription-direction: ** positive * centisome-position: ** 93.38606 * left-end-position: ** 3588830 *...")
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction DUTP-PYROP-RXN ==
+
== Gene FSU_RS14755 ==
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23]
 
−
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
 
−
* direction:
 
−
** left-to-right
 
 
* common-name:
 
* common-name:
−
** nucleoside triphosphate pyrophosphohydrolase
+
** kdsb
−
** dutp diphosphatase
+
* transcription-direction:
−
== Reaction formula ==
+
** positive
−
* 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* centisome-position:
−
== Gene(s) associated with this reaction  ==
+
** 93.38606   
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* left-end-position:
−
* Gene: [[FISUC_RS00035]]
+
** 3588830
 +
* right-end-position:
 +
** 3589582
 +
== Organism(s) associated with this gene  ==
 +
* [[fibrobacter_23042021]]
 +
== Reaction(s) associated ==
 +
* [[CPM-KDOSYNTH-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FISUC_RS02370]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS04260]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS01905]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
== Pathway(s) associated ==
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* [[PWY-1269]]
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
</div>
+
{{#set: common-name=kdsb}}
−
== Pathway(s) ==
+
{{#set: transcription-direction=positive}}
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
+
{{#set: centisome-position=93.38606    }}
−
** '''11''' reactions found over '''13''' reactions in the full pathway
+
{{#set: left-end-position=3588830}}
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
+
{{#set: right-end-position=3589582}}
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
{{#set: organism associated=fibrobacter_23042021}}
−
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation:
+
{{#set: nb reaction associated=1}}
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
{{#set: nb pathway associated=1}}
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
== External links  ==
 
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10249 10249]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q89932 Q89932]
 
−
** [http://www.uniprot.org/uniprot/P33316 P33316]
 
−
** [http://www.uniprot.org/uniprot/O15923 O15923]
 
−
** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
 
−
** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
 
−
** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
 
−
** [http://www.uniprot.org/uniprot/P43792 P43792]
 
−
** [http://www.uniprot.org/uniprot/P32518 P32518]
 
−
** [http://www.uniprot.org/uniprot/P68635 P68635]
 
−
** [http://www.uniprot.org/uniprot/P68634 P68634]
 
−
** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 
−
** [http://www.uniprot.org/uniprot/P03195 P03195]
 
−
** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 
−
** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 
−
** [http://www.uniprot.org/uniprot/P33317 P33317]
 
−
** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 
−
** [http://www.uniprot.org/uniprot/P43058 P43058]
 
−
** [http://www.uniprot.org/uniprot/O80091 O80091]
 
−
** [http://www.uniprot.org/uniprot/O36404 O36404]
 
−
** [http://www.uniprot.org/uniprot/O41033 O41033]
 
−
** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 
−
** [http://www.uniprot.org/uniprot/O39251 O39251]
 
−
** [http://www.uniprot.org/uniprot/O01934 O01934]
 
−
** [http://www.uniprot.org/uniprot/P10234 P10234]
 
−
** [http://www.uniprot.org/uniprot/P06968 P06968]
 
−
** [http://www.uniprot.org/uniprot/P09254 P09254]
 
−
** [http://www.uniprot.org/uniprot/P28892 P28892]
 
−
** [http://www.uniprot.org/uniprot/P28893 P28893]
 
−
</div>
 
−
{{#set: ec-number=ec-3.6.1.23|ec-3.6.1.9}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=nucleoside triphosphate pyrophosphohydrolase|dutp diphosphatase}}
 
−
{{#set: nb gene associated=4}}
 
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}
 

Revision as of 18:11, 26 April 2021

Gene FSU_RS14755

  • common-name:
    • kdsb
  • transcription-direction:
    • positive
  • centisome-position:
    • 93.38606
  • left-end-position:
    • 3588830
  • right-end-position:
    • 3589582

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-1269
    • 1 reactions found over 5 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS06065&oldid=78515"