Difference between revisions of "PYRAMKIN-RXN"

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(Created page with "Category:reaction == Reaction 3.1.4.2-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.4.2 ec-3.1.4.2] * direction: ** left-to-right == Reaction formula == * 1 L-...")
(Created page with "Category:reaction == Reaction GLUTAMATE-SYNTHASE-NADH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.14 ec-1.4.1.14] * direction: ** left-to-right == Reaction f...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 3.1.4.2-RXN ==
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== Reaction GLUTAMATE-SYNTHASE-NADH-RXN ==
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.1.4.2 ec-3.1.4.2]
+
** [http://enzyme.expasy.org/EC/1.4.1.14 ec-1.4.1.14]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[L-1-GLYCERO-PHOSPHORYLCHOLINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CHOLINE]][c] '''+''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[PROTON]][c]
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 2 [[GLT]][c] '''+''' 1 [[NAD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[FSU_RS06790]]
 
** Category: [[orthology]]
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7367]], phosphatidylcholine resynthesis via glycerophosphocholine:
+
* [[GLUGLNSYN-PWY]], L-glutamate biosynthesis IV:
** '''1''' reactions found over '''3''' reactions in the full pathway
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6963]], ammonia assimilation cycle I:
 +
** '''4''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: to improve flux of network
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16062 16062]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13755 13755]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R01030 R01030]
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** [http://www.genome.jp/dbget-bin/www_bget?R00093 R00093]
{{#set: ec-number=ec-3.1.4.2}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9RXX2 Q9RXX2]
 +
** [http://www.uniprot.org/uniprot/Q03460 Q03460]
 +
** [http://www.uniprot.org/uniprot/Q22275 Q22275]
 +
** [http://www.uniprot.org/uniprot/O61143 O61143]
 +
** [http://www.uniprot.org/uniprot/Q9C102 Q9C102]
 +
** [http://www.uniprot.org/uniprot/Q9P540 Q9P540]
 +
{{#set: ec-number=ec-1.4.1.14}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=0}}
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=orthofinder}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=to improve flux of network}}
{{#set: reconstruction source=plantarum|bthetaiotaomicron}}
+
{{#set: reconstruction source=add_expert_reactions}}

Revision as of 17:08, 14 October 2022

Reaction GLUTAMATE-SYNTHASE-NADH-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUGLNSYN-PWY, L-glutamate biosynthesis IV:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6963, ammonia assimilation cycle I:
    • 4 reactions found over 2 reactions in the full pathway

Reconstruction information

External links