Difference between revisions of "1.2.1.13-RXN"

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(Created page with "Category:reaction == Reaction HOLO-ACP-SYNTH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.8.7 ec-2.7.8.7] * direction: ** left-to-right == Reaction formula == *...")
(Created page with "Category:reaction == Reaction 2PGADEHYDRAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11] * direction: ** reversible * common-name: ** phosphopy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HOLO-ACP-SYNTH-RXN ==
+
== Reaction 2PGADEHYDRAT-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.7 ec-2.7.8.7]
+
** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** phosphopyruvate hydratase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[All-apo-ACPs]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[All-holo-ACPs]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[2-PG]][c] '''<=>''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS12460]]
+
* Gene: [[FSU_RS08170]]
−
** Category: [[manual]]
+
** Category: [[annotation]]
−
*** Source: [[reactions_add_147_emile_annot]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added from the nc_017448.1 f. succinogenes s85 genome scale metabolic model.
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS06275]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6012-1]], acyl carrier protein activation:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
* [[P124-PWY]], Bifidobacterium shunt:
−
* [[PWY-6012]], acyl carrier protein metabolism:
+
** '''13''' reactions found over '''15''' reactions in the full pathway
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative):
 +
** '''3''' reactions found over '''9''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-8004]], Entner-Doudoroff pathway I:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-1042]], glycolysis IV (plant cytosol):
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''9''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I:
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[reactions_add_147_emile_annot]]; tool: [[curation]]; comment: added from the nc_017448.1 f. succinogenes s85 genome scale metabolic model.
+
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12069 12069]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10167 10167]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01625 R01625]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00658 R00658]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PMP8 Q9PMP8]
+
** [http://www.uniprot.org/uniprot/P04764 P04764]
−
** [http://www.uniprot.org/uniprot/P24224 P24224]
+
** [http://www.uniprot.org/uniprot/P07322 P07322]
−
** [http://www.uniprot.org/uniprot/O84102 O84102]
+
** [http://www.uniprot.org/uniprot/P07323 P07323]
−
** [http://www.uniprot.org/uniprot/Q9RQW2 Q9RQW2]
+
** [http://www.uniprot.org/uniprot/P06733 P06733]
−
** [http://www.uniprot.org/uniprot/O83800 O83800]
+
** [http://www.uniprot.org/uniprot/P19140 P19140]
−
** [http://www.uniprot.org/uniprot/Q9ZCX5 Q9ZCX5]
+
** [http://www.uniprot.org/uniprot/P25704 P25704]
−
** [http://www.uniprot.org/uniprot/Q9ZL36 Q9ZL36]
+
** [http://www.uniprot.org/uniprot/P30575 P30575]
−
** [http://www.uniprot.org/uniprot/O25488 O25488]
+
** [http://www.uniprot.org/uniprot/P33675 P33675]
−
** [http://www.uniprot.org/uniprot/P96618 P96618]
+
** [http://www.uniprot.org/uniprot/P47647 P47647]
−
** [http://www.uniprot.org/uniprot/O66995 O66995]
+
** [http://www.uniprot.org/uniprot/Q9JU46 Q9JU46]
−
** [http://www.uniprot.org/uniprot/P0A4W8 P0A4W8]
+
** [http://www.uniprot.org/uniprot/P37869 P37869]
−
{{#set: ec-number=ec-2.7.8.7}}
+
** [http://www.uniprot.org/uniprot/Q9URB2 Q9URB2]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9CIT0 Q9CIT0]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9CHS7 Q9CHS7]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/P43806 P43806]
−
{{#set: reconstruction category=manual}}
+
** [http://www.uniprot.org/uniprot/P42448 P42448]
−
{{#set: reconstruction tool=curation}}
+
** [http://www.uniprot.org/uniprot/P42848 P42848]
−
{{#set: reconstruction comment=added from the nc_017448.1 f. succinogenes s85 genome scale metabolic model.}}
+
** [http://www.uniprot.org/uniprot/Q05524 Q05524]
−
{{#set: reconstruction source=reactions_add_147_emile_annot}}
+
** [http://www.uniprot.org/uniprot/P42897 P42897]
 +
** [http://www.uniprot.org/uniprot/P40370 P40370]
 +
** [http://www.uniprot.org/uniprot/P51913 P51913]
 +
** [http://www.uniprot.org/uniprot/P26300 P26300]
 +
** [http://www.uniprot.org/uniprot/Q42887 Q42887]
 +
** [http://www.uniprot.org/uniprot/P25696 P25696]
 +
** [http://www.uniprot.org/uniprot/P00924 P00924]
 +
** [http://www.uniprot.org/uniprot/P00925 P00925]
 +
** [http://www.uniprot.org/uniprot/P0A6P9 P0A6P9]
 +
** [http://www.uniprot.org/uniprot/P29201 P29201]
 +
** [http://www.uniprot.org/uniprot/P09104 P09104]
 +
** [http://www.uniprot.org/uniprot/P21550 P21550]
 +
** [http://www.uniprot.org/uniprot/P08734 P08734]
 +
** [http://www.uniprot.org/uniprot/Q7M4Y6 Q7M4Y6]
 +
** [http://www.uniprot.org/uniprot/P15429 P15429]
 +
** [http://www.uniprot.org/uniprot/P13929 P13929]
 +
** [http://www.uniprot.org/uniprot/P15007 P15007]
 +
** [http://www.uniprot.org/uniprot/P17182 P17182]
 +
** [http://www.uniprot.org/uniprot/P17183 P17183]
 +
** [http://www.uniprot.org/uniprot/P26301 P26301]
 +
** [http://www.uniprot.org/uniprot/P31683 P31683]
 +
** [http://www.uniprot.org/uniprot/Q54274 Q54274]
 +
** [http://www.uniprot.org/uniprot/P42896 P42896]
 +
** [http://www.uniprot.org/uniprot/Q27727 Q27727]
 +
** [http://www.uniprot.org/uniprot/Q9UWJ5 Q9UWJ5]
 +
** [http://www.uniprot.org/uniprot/P48285 P48285]
 +
** [http://www.uniprot.org/uniprot/Q12007 Q12007]
 +
** [http://www.uniprot.org/uniprot/P42222 P42222]
 +
** [http://www.uniprot.org/uniprot/P75189 P75189]
 +
** [http://www.uniprot.org/uniprot/P77972 P77972]
 +
** [http://www.uniprot.org/uniprot/Q49059 Q49059]
 +
** [http://www.uniprot.org/uniprot/P42895 P42895]
 +
** [http://www.uniprot.org/uniprot/Q42971 Q42971]
 +
** [http://www.uniprot.org/uniprot/Q43130 Q43130]
 +
** [http://www.uniprot.org/uniprot/O69174 O69174]
 +
</div>
 +
{{#set: ec-number=ec-4.2.1.11}}
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=phosphopyruvate hydratase}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=20}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=ecoli|plantarum|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}

Revision as of 17:08, 14 October 2022

Reaction 2PGADEHYDRAT-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • phosphopyruvate hydratase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P124-PWY, Bifidobacterium shunt:
    • 13 reactions found over 15 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative):
    • 3 reactions found over 9 reactions in the full pathway
  • P122-PWY, heterolactic fermentation:
    • 14 reactions found over 18 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-8004, Entner-Doudoroff pathway I:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway):
    • 6 reactions found over 13 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-1042, glycolysis IV (plant cytosol):
    • 8 reactions found over 10 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
    • 10 reactions found over 11 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 9 reactions found over 8 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus):
    • 6 reactions found over 10 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I:
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered):
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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