Difference between revisions of "FISUC RS03590"

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(Created page with "Category:gene == Gene FISUC_RS14120 == * transcription-direction: ** positive * centisome-position: ** 90.20605 * left-end-position: ** 3466289 * right-end-position: *...")
(Created page with "Category:gene == Gene FSU_RS15345 == * transcription-direction: ** negative * centisome-position: ** 97.44223 * left-end-position: ** 3744709 * right-end-position: **...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene FISUC_RS14120 ==
+
== Gene FSU_RS15345 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* centisome-position:
 
* centisome-position:
−
** 90.20605    
+
** 97.44223    
 
* left-end-position:
 
* left-end-position:
−
** 3466289
+
** 3744709
 
* right-end-position:
 
* right-end-position:
−
** 3466999
+
** 3745554
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[fibrobacter_23042021]]
+
* [[fsucgem]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[FUMHYDR-RXN]]
−
* [[1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-15043]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16025]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16032]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16067]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16076]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16077]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16118]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-1623]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17008]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17009]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17010]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17011]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17012]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17013]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17014]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17015]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17019]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17020]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17021]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17022]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17023]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-17024]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[LTARTDEHYDRA-RXN]]
−
* [[RXN-17729]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
−
* [[RXN-20512]]
+
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-20528]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-20565]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-5514]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-6705]]
 
−
** Category: [[annotation]]
 
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-5981]]
+
* [[P108-PWY]]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY0-1319]]
+
* [[TCA]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-7417]]
+
* [[PWY-7254]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7411]]
+
* [[PWY-5690]]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7589]]
+
* [[PWY66-398]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''7''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7587]]
+
* [[PWY-5913]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6453]]
+
* [[REDCITCYC]]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[TRIGLSYN-PWY]]
+
* [[PWY-6969]]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''9''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-5667]]
+
* [[P105-PWY]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''8''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7782]]
+
* [[FERMENTATION-PWY]]
−
** '''2''' reactions found over '''16''' reactions in the full pathway
+
** '''14''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-8053]]
+
* [[PWY-7384]]
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''8''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-8051]]
+
* [[PWY-6728]]
−
** '''2''' reactions found over '''12''' reactions in the full pathway
+
** '''9''' reactions found over '''19''' reactions in the full pathway
−
* [[PWY-8055]]
+
* [[PWY-561]]
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''4''' reactions in the full pathway
 +
* [[P42-PWY]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[P23-PWY]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5392]]
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: transcription-direction=positive}}
+
{{#set: transcription-direction=negative}}
−
{{#set: centisome-position=90.20605   }}
+
{{#set: centisome-position=97.44223   }}
−
{{#set: left-end-position=3466289}}
+
{{#set: left-end-position=3744709}}
−
{{#set: right-end-position=3466999}}
+
{{#set: right-end-position=3745554}}
−
{{#set: organism associated=fibrobacter_23042021}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: nb reaction associated=29}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=13}}
+
{{#set: nb pathway associated=16}}

Revision as of 17:12, 14 October 2022

Gene FSU_RS15345

  • transcription-direction:
    • negative
  • centisome-position:
    • 97.44223
  • left-end-position:
    • 3744709
  • right-end-position:
    • 3745554

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • P108-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • PWY-7384
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-561
    • 6 reactions found over 4 reactions in the full pathway
  • P42-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS03590&oldid=83787"