Difference between revisions of "FSU RS06080"

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(Created page with "Category:gene == Gene FSU_RS06080 == * common-name: ** carb * transcription-direction: ** negative * centisome-position: ** 38.537354 * left-end-position: ** 1480992 *...")
(Created page with "Category:gene == Gene FSU_RS01605 == * common-name: ** fabf * transcription-direction: ** negative * centisome-position: ** 9.920547 * left-end-position: ** 381247 * r...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene FSU_RS06080 ==
+
== Gene FSU_RS01605 ==
 
* common-name:
 
* common-name:
−
** carb
+
** fabf
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* centisome-position:
 
* centisome-position:
−
** 38.537354    
+
** 9.920547    
 
* left-end-position:
 
* left-end-position:
−
** 1480992
+
** 381247
 
* right-end-position:
 
* right-end-position:
−
** 1484210
+
** 382491
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[fibrobacter_23042021]]
+
* [[fsucgem]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[CARBPSYN-RXN]]
+
* [[2.3.1.179-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[2.3.1.41-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
+
* [[3-OXOACYL-ACP-SYNTH-RXN]]
−
* [[GLUTAMIN-RXN]]
+
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10059]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-10654]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10658]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11474]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11479]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16615]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16621]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16625]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16629]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8391]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9516]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9523]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9527]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9531]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9535]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13202]]
+
* [[RXN-9539]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14196]]
+
* [[RXN-9632]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-9648]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-9650]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-9651]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-9652]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-9653]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-9654]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN0-2141]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16909]]
+
* [[RXN1G-368]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN1G-445]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN1G-460]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16910]]
+
* [[RXN1G-499]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN3O-1803]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-7791]]
+
* [[PWY-5973]]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5686]]
+
* [[FASYN-INITIAL-PWY]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7790]]
+
* [[PWY-7388]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5154]]
+
* [[PWY-5966]]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[ARGSYN-PWY]]
+
* [[PWY-5965]]
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7400]]
+
* [[FASYN-ELONG-PWY]]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[ARGSYNBSUB-PWY]]
+
* [[PWY-6113]]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''7''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY490-4]]
+
* [[PWYG-321]]
 +
** '''12''' reactions found over '''182''' reactions in the full pathway
 +
* [[PWY-6282]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6519]]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7664]]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7663]]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5921]]
+
* [[PWY-5367]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[CITRULBIO-PWY]]
+
* [[PWY-5971]]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''22''' reactions found over '''31''' reactions in the full pathway
−
* [[GLUTAMINDEG-PWY]]
+
* [[PWY-5989]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-4984]]
+
* [[PWY-5994]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''20''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-7693]]
+
* [[PWY-7858]]
−
** '''3''' reactions found over '''13''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY0-41]]
+
* [[PWY0-862]]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[CITRULLINE-DEG-PWY]]
+
* [[PWY3O-355]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: common-name=carb}}
+
{{#set: common-name=fabf}}
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: centisome-position=38.537354   }}
+
{{#set: centisome-position=9.920547   }}
−
{{#set: left-end-position=1480992}}
+
{{#set: left-end-position=381247}}
−
{{#set: right-end-position=1484210}}
+
{{#set: right-end-position=382491}}
−
{{#set: organism associated=fibrobacter_23042021}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=33}}
−
{{#set: nb pathway associated=15}}
+
{{#set: nb pathway associated=19}}

Revision as of 17:12, 14 October 2022

Gene FSU_RS01605

  • common-name:
    • fabf
  • transcription-direction:
    • negative
  • centisome-position:
    • 9.920547
  • left-end-position:
    • 381247
  • right-end-position:
    • 382491

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5973
    • 3 reactions found over 5 reactions in the full pathway
  • FASYN-INITIAL-PWY
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5965
    • 2 reactions found over 2 reactions in the full pathway
  • FASYN-ELONG-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6113
    • 7 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 12 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • PWY-5989
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-7858
    • 3 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 3 reactions found over 6 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS06080&oldid=83897"