Difference between revisions of "ORNITHINE-CYCLODEAMINASE-RXN"
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(Created page with "Category:reaction == Reaction RXN0-1342 == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.99.17 ec-2.4.99.17] * direction: ** left-to-right * common-name: ** trna preq1(...") |
(Created page with "Category:reaction == Reaction HISTPRATPHYD-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.31 ec-3.6.1.31] * direction: ** left-to-right * common-name: ** phosph...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction HISTPRATPHYD-RXN == |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.6.1.31 ec-3.6.1.31] |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** phosphoribosyl-atp diphosphatase |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[PHOSPHORIBOSYL-ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PHOSPHORIBOSYL-AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[FSU_RS01510]] |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[FISUC_RS05705]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[FSU_RS07605]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[HISTSYN-PWY]], L-histidine biosynthesis: |
− | ** ''' | + | ** '''10''' reactions found over '''10''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22829 22829] |
− | {{#set: ec-number=ec- | + | * LIGAND-RXN: |
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R04035 R04035] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P44434 P44434] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X0C5 Q9X0C5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PM71 Q9PM71] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02130 Q02130] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RWD6 Q9RWD6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9K0J4 Q9K0J4] | ||
+ | ** [http://www.uniprot.org/uniprot/O34912 O34912] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A5B1 P0A5B1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9KSW7 Q9KSW7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9HUB6 Q9HUB6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57750 Q57750] | ||
+ | ** [http://www.uniprot.org/uniprot/O27344 O27344] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVJ9 Q9JVJ9] | ||
+ | ** [http://www.uniprot.org/uniprot/O67780 O67780] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PBD1 Q9PBD1] | ||
+ | ** [http://www.uniprot.org/uniprot/P26722 P26722] | ||
+ | ** [http://www.uniprot.org/uniprot/P45353 P45353] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12670 Q12670] | ||
+ | ** [http://www.uniprot.org/uniprot/P50935 P50935] | ||
+ | ** [http://www.uniprot.org/uniprot/P00815 P00815] | ||
+ | ** [http://www.uniprot.org/uniprot/P07685 P07685] | ||
+ | ** [http://www.uniprot.org/uniprot/O59667 O59667] | ||
+ | ** [http://www.uniprot.org/uniprot/O82768 O82768] | ||
+ | ** [http://www.uniprot.org/uniprot/P10367 P10367] | ||
+ | ** [http://www.uniprot.org/uniprot/P06989 P06989] | ||
+ | </div> | ||
+ | {{#set: ec-number=ec-3.6.1.31}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=phosphoribosyl-atp diphosphatase}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=orthofinder|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}} | + | {{#set: reconstruction source=ecoli|plantarum|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}} |
Revision as of 07:50, 17 October 2022
Contents
Reaction HISTPRATPHYD-RXN
- ec-number:
- direction:
- left-to-right
- common-name:
- phosphoribosyl-atp diphosphatase
Reaction formula
- 1 PHOSPHORIBOSYL-ATP[c] + 1 WATER[c] => 1 PHOSPHORIBOSYL-AMP[c] + 1 PPI[c] + 2 PROTON[c]
Gene(s) associated with this reaction
- Gene: FSU_RS01510
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: faecalibacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: bthetaiotaomicron, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: FISUC_RS05705
- Category: annotation
- Source: fibrobacter_succinogenes2, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: FSU_RS07605
- Category: annotation
- Source: fibrobacter_succinogenes1, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: bifidobacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: plantarum, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- HISTSYN-PWY, L-histidine biosynthesis:
- 10 reactions found over 10 reactions in the full pathway
Reconstruction information
- category: orthology; source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- category: orthology; source: plantarum; tool: orthofinder; comment: n.a
- category: orthology; source: faecalibacterium; tool: orthofinder; comment: n.a
- category: orthology; source: bifidobacterium; tool: orthofinder; comment: n.a
- category: orthology; source: ecoli; tool: orthofinder; comment: n.a
- category: annotation; source: fibrobacter_succinogenes2; tool: pathwaytools; comment: n.a
- category: annotation; source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
External links