Difference between revisions of "RXN-17729"

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(Created page with "Category:reaction == Reaction TRANS-RXN0-623 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] * direction: ** left-to-right * common-name: ** long-chain...")
(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2] * direction: ** left-to-right == Reaction for...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRANS-RXN0-623 ==
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== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** long-chain fatty acid--coa ligase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][e] '''+''' 1 [[PROTON]][e] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS14015]]
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* Gene: [[FSU_RS00325]]
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** Category: [[annotation]]
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** Category: [[orthology]]
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS12045]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5022]], 4-aminobutanoate degradation V:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7126]], ethylene biosynthesis IV (engineered):
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 +
** '''1''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-6.2.1.3}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P20016 P20016]
 +
** [http://www.uniprot.org/uniprot/P28997 P28997]
 +
** [http://www.uniprot.org/uniprot/P41755 P41755]
 +
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
 +
** [http://www.uniprot.org/uniprot/P00365 P00365]
 +
** [http://www.uniprot.org/uniprot/P93541 P93541]
 +
** [http://www.uniprot.org/uniprot/P80319 P80319]
 +
** [http://www.uniprot.org/uniprot/P24295 P24295]
 +
** [http://www.uniprot.org/uniprot/P27346 P27346]
 +
** [http://www.uniprot.org/uniprot/P33327 P33327]
 +
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
 +
** [http://www.uniprot.org/uniprot/O04937 O04937]
 +
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
 +
** [http://www.uniprot.org/uniprot/O74024 O74024]
 +
** [http://www.uniprot.org/uniprot/O59650 O59650]
 +
</div>
 +
{{#set: ec-number=ec-1.4.1.2}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=long-chain fatty acid--coa ligase}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=6}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=orthofinder}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=bthetaiotaomicron}}

Revision as of 07:51, 17 October 2022

Reaction GLUTAMATE-DEHYDROGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5022, 4-aminobutanoate degradation V:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7126, ethylene biosynthesis IV (engineered):
    • 1 reactions found over 3 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 1 reactions found over 11 reactions in the full pathway
  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 9 reactions found over 19 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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