Difference between revisions of "ExchangeSeed-NADH"
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(Created page with "Category:reaction == Reaction RXN-13482 == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.3.3 ec-2.1.3.3] * direction: ** reversible * common-name: ** ornithine carbamoy...") |
(Created page with "Category:reaction == Reaction GLYRIBONUCSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4.13 ec-6.3.4.13] * direction: ** left-to-right * common-name: ** phosp...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction GLYRIBONUCSYN-RXN == |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.3.4.13 ec-6.3.4.13] |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** phosphoribosylamine--glycine ligase |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[FISUC_RS09330]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[FSU_RS11270]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * | + | ** Category: [[orthology]] |
− | ** | + | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | + | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a |
+ | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: | ||
+ | ** '''7''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
− | {{#set: ec-number=ec- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: direction= | + | * RHEA: |
− | {{#set: common-name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P07244 P07244] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58347 Q58347] | ||
+ | ** [http://www.uniprot.org/uniprot/P12039 P12039] | ||
+ | ** [http://www.uniprot.org/uniprot/P21872 P21872] | ||
+ | ** [http://www.uniprot.org/uniprot/P15640 P15640] | ||
+ | ** [http://www.uniprot.org/uniprot/P00967 P00967] | ||
+ | ** [http://www.uniprot.org/uniprot/P16340 P16340] | ||
+ | ** [http://www.uniprot.org/uniprot/P22102 P22102] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6] | ||
+ | ** [http://www.uniprot.org/uniprot/P43845 P43845] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47] | ||
+ | ** [http://www.uniprot.org/uniprot/Q64737 Q64737] | ||
+ | ** [http://www.uniprot.org/uniprot/P20772 P20772] | ||
+ | ** [http://www.uniprot.org/uniprot/P26977 P26977] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59492 Q59492] | ||
+ | ** [http://www.uniprot.org/uniprot/P74232 P74232] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42804 Q42804] | ||
+ | ** [http://www.uniprot.org/uniprot/P52421 P52421] | ||
+ | </div> | ||
+ | {{#set: ec-number=ec-6.3.4.13}} | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=phosphoribosylamine--glycine ligase}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=orthofinder|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}} | + | {{#set: reconstruction source=ecoli|bifidobacterium|plantarum|fibrobacter_succinogenes2|fibrobacter_succinogenes1}} |
Revision as of 07:52, 17 October 2022
Contents
Reaction GLYRIBONUCSYN-RXN
- ec-number:
- direction:
- left-to-right
- common-name:
- phosphoribosylamine--glycine ligase
Reaction formula
- 1 5-P-BETA-D-RIBOSYL-AMINE[c] + 1 ATP[c] + 1 GLY[c] => 1 5-PHOSPHO-RIBOSYL-GLYCINEAMIDE[c] + 1 ADP[c] + 1 PROTON[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: FISUC_RS09330
- Category: annotation
- Source: fibrobacter_succinogenes2, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: FSU_RS11270
- Category: annotation
- Source: fibrobacter_succinogenes1, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: bifidobacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: plantarum, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
- 7 reactions found over 5 reactions in the full pathway
- PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I:
- 5 reactions found over 5 reactions in the full pathway
- PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II:
- 5 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: orthology; source: plantarum; tool: orthofinder; comment: n.a
- category: orthology; source: ecoli; tool: orthofinder; comment: n.a
- category: orthology; source: bifidobacterium; tool: orthofinder; comment: n.a
- category: annotation; source: fibrobacter_succinogenes2; tool: pathwaytools; comment: n.a
- category: annotation; source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
External links