Difference between revisions of "MANNPISOM-RXN"

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(Created page with "Category:reaction == Reaction NICONUCADENYLYLTRAN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.18 ec-2.7.7.18] * direction: ** left-to-right * common-name: **...")
(Created page with "Category:reaction == Reaction RXN-11832 == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.14 ec-2.7.4.14] ** [http://enzyme.expasy.org/EC/2.7.4.25 ec-2.7.4.25] * direc...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction NICONUCADENYLYLTRAN-RXN ==
+
== Reaction RXN-11832 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.18 ec-2.7.7.18]
+
** [http://enzyme.expasy.org/EC/2.7.4.14 ec-2.7.4.14]
 +
** [http://enzyme.expasy.org/EC/2.7.4.25 ec-2.7.4.25]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** nicotinate-nicotinamide nucleotide adenylyltransferase
+
** (d)cmp kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[DEAMIDO-NAD]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CMP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[CDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS02095]]
+
* Gene: [[FSU_RS13255]]
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* Gene: [[FISUC_RS03760]]
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS00225]]
+
* Gene: [[FSU_RS05650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5381]], pyridine nucleotide cycling (plants):
+
* [[PWY-7205]], CMP phosphorylation:
−
** '''4''' reactions found over '''11''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PYRIDNUCSAL-PWY]], NAD salvage pathway I (PNC VI cycle):
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7761]], NAD salvage pathway II (PNC IV cycle):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY3O-4107]], NAD salvage pathway V (PNC V cycle):
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate):
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22861 22861]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11600 11600]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O59845 O59845]
 +
** [http://www.uniprot.org/uniprot/Q29561 Q29561]
 +
** [http://www.uniprot.org/uniprot/P43892 P43892]
 +
** [http://www.uniprot.org/uniprot/Q58071 Q58071]
 +
** [http://www.uniprot.org/uniprot/Q9CEY1 Q9CEY1]
 +
** [http://www.uniprot.org/uniprot/P57064 P57064]
 +
** [http://www.uniprot.org/uniprot/P0A6I0 P0A6I0]
 +
** [http://www.uniprot.org/uniprot/P47572 P47572]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03005 R03005]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00512 R00512]
−
{{#set: ec-number=ec-2.7.7.18}}
+
{{#set: ec-number=ec-2.7.4.25|ec-2.7.4.14}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=nicotinate-nicotinamide nucleotide adenylyltransferase}}
+
{{#set: common-name=(d)cmp kinase}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|plantarum|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=ecoli|bifidobacterium|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}

Revision as of 07:52, 17 October 2022

Reaction RXN-11832

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7205, CMP phosphorylation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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