Difference between revisions of "FSU RS13560"
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(Created page with "Category:gene == Gene FSU_RS01090 == * transcription-direction: ** positive * centisome-position: ** 6.751593 * left-end-position: ** 259464 * right-end-position: ** 2...") |
(Created page with "Category:gene == Gene FSU_RS00960 == * common-name: ** carb * transcription-direction: ** positive * centisome-position: ** 5.895674 * left-end-position: ** 226571 * r...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene FSU_RS00960 == |
+ | * common-name: | ||
+ | ** carb | ||
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 5.895674 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 226571 |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 229834 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[fsucgem]] | * [[fsucgem]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[CARBPSYN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
Line 21: | Line 24: | ||
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | *** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * [[GLUTAMIN-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-13202]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14196]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-16909]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-16910]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[PWY-5686]] |
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7790]] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5154]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[ARGSYN-PWY]] | ||
+ | ** '''5''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7400]] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7791]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[ARGSYNBSUB-PWY]] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY490-4]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5921]] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[CITRULBIO-PWY]] | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[GLUTAMINDEG-PWY]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-4984]] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7693]] | ||
+ | ** '''3''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY0-41]] | ||
** '''2''' reactions found over '''5''' reactions in the full pathway | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
− | * [[ | + | * [[CITRULLINE-DEG-PWY]] |
** '''3''' reactions found over '''3''' reactions in the full pathway | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
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− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
</div> | </div> | ||
+ | {{#set: common-name=carb}} | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: centisome-position= | + | {{#set: centisome-position=5.895674 }} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=226571}} |
− | {{#set: right-end-position= | + | {{#set: right-end-position=229834}} |
{{#set: organism associated=fsucgem}} | {{#set: organism associated=fsucgem}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=6}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=15}} |
Revision as of 07:55, 17 October 2022
Contents
Gene FSU_RS00960
- common-name:
- carb
- transcription-direction:
- positive
- centisome-position:
- 5.895674
- left-end-position:
- 226571
- right-end-position:
- 229834
Organism(s) associated with this gene
Reaction(s) associated
- CARBPSYN-RXN
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: orthology
- source: ecoli; tool: orthofinder; comment: n.a
- source: bifidobacterium; tool: orthofinder; comment: n.a
- source: faecalibacterium; tool: orthofinder; comment: n.a
- source: plantarum; tool: orthofinder; comment: n.a
- source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- Category: annotation
- GLUTAMIN-RXN
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13202
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14196
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16909
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16910
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5686
- 6 reactions found over 6 reactions in the full pathway
- PWY-7790
- 6 reactions found over 6 reactions in the full pathway
- PWY-5154
- 7 reactions found over 9 reactions in the full pathway
- ARGSYN-PWY
- 5 reactions found over 4 reactions in the full pathway
- PWY-7400
- 7 reactions found over 9 reactions in the full pathway
- PWY-7791
- 5 reactions found over 6 reactions in the full pathway
- ARGSYNBSUB-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY490-4
- 3 reactions found over 4 reactions in the full pathway
- PWY-5921
- 4 reactions found over 4 reactions in the full pathway
- CITRULBIO-PWY
- 8 reactions found over 8 reactions in the full pathway
- GLUTAMINDEG-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-4984
- 5 reactions found over 5 reactions in the full pathway
- PWY-7693
- 3 reactions found over 13 reactions in the full pathway
- PWY0-41
- 2 reactions found over 5 reactions in the full pathway
- CITRULLINE-DEG-PWY
- 3 reactions found over 3 reactions in the full pathway