Difference between revisions of "RXN-10917"

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(Created page with "Category:reaction == Reaction 3.1.26.3-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.26.3 ec-3.1.26.3] * direction: ** left-to-right * common-name: ** ribonuclea...")
(Created page with "Category:reaction == Reaction RXN-10917 == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3] * direction: ** left-to-right == Reaction formula == * 1 CPD-...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction 3.1.26.3-RXN ==
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== Reaction RXN-10917 ==
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/3.1.26.3 ec-3.1.26.3]
+
** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** ribonuclease iii
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[RNASE-III-MRNA-PROCESSING-SUBSTRATE]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[RNASE-III-PROCESSING-PRODUCT-MRNA]][c] '''+''' 2 [[mRNA-Fragments]][c]
+
* 1 [[CPD-11876]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[VANILLYL_MANDELATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS06065]]
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* Gene: [[FSU_RS01755]]
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** Category: [[annotation]]
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** Category: [[manual]]
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
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* Gene: [[FSU_RS12075]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS10120]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6342]], noradrenaline and adrenaline degradation:
 +
** '''4''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the annotation part in the first version of the fibrobacter gem
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* LIGAND-RXN:
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** [http://www.uniprot.org/uniprot/Q9PM40 Q9PM40]
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** [http://www.genome.jp/dbget-bin/www_bget?R04891 R04891]
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** [http://www.uniprot.org/uniprot/P51833 P51833]
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{{#set: ec-number=ec-1.2.1.3}}
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** [http://www.uniprot.org/uniprot/Q9CHD0 Q9CHD0]
 
−
** [http://www.uniprot.org/uniprot/Q9JVD3 Q9JVD3]
 
−
** [http://www.uniprot.org/uniprot/P44441 P44441]
 
−
** [http://www.uniprot.org/uniprot/P0A7Y0 P0A7Y0]
 
−
** [http://www.uniprot.org/uniprot/P09155 P09155]
 
−
** [http://www.uniprot.org/uniprot/Q52698 Q52698]
 
−
** [http://www.uniprot.org/uniprot/Q49034 Q49034]
 
−
** [http://www.uniprot.org/uniprot/O69469 O69469]
 
−
{{#set: ec-number=ec-3.1.26.3}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=ribonuclease iii}}
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{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=1}}
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{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=present in the annotation part in the first version of the fibrobacter gem}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=add_expert_reactions}}
−
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
 

Latest revision as of 11:15, 17 October 2022

Reaction RXN-10917

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6342, noradrenaline and adrenaline degradation:
    • 4 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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