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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction FPPSYN-RXN == | + | == Reaction TransportSeed-ZN+2 == |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10]
| |
| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c] | + | * 1.0 [[ZN+2]][e] '''=>''' 1.0 [[ZN+2]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[FSU_RS06175]]
| |
| − | ** Category: [[orthology]]
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| − | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[FSU_RS10165]]
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| − | ** Category: [[orthology]]
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| − | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
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| − | ** '''3''' reactions found over '''3''' reactions in the full pathway
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| − | * [[PWY-6859]], all-trans-farnesol biosynthesis:
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| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
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| − | * [[PWY-7102]], bisabolene biosynthesis (engineered):
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| − | ** '''3''' reactions found over '''6''' reactions in the full pathway
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| − | * [[PWY-7721]], methyl phomopsenoate biosynthesis:
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| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
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| − | * [[PWY-7736]], stellatic acid biosynthesis:
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| − | ** '''4''' reactions found over '''8''' reactions in the full pathway
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| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment |
| − | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P08524 P08524]
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| − | ** [http://www.uniprot.org/uniprot/P05369 P05369]
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| − | ** [http://www.uniprot.org/uniprot/P14324 P14324]
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| − | ** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
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| − | ** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
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| − | ** [http://www.uniprot.org/uniprot/P45204 P45204]
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| − | ** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
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| − | ** [http://www.uniprot.org/uniprot/P49350 P49350]
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| − | ** [http://www.uniprot.org/uniprot/P22939 P22939]
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| − | ** [http://www.uniprot.org/uniprot/Q08291 Q08291]
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| − | ** [http://www.uniprot.org/uniprot/P49349 P49349]
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| − | ** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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| − | ** [http://www.uniprot.org/uniprot/P49351 P49351]
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| − | ** [http://www.uniprot.org/uniprot/P49352 P49352]
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| − | ** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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| − | ** [http://www.uniprot.org/uniprot/O24241 O24241]
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| − | ** [http://www.uniprot.org/uniprot/O24242 O24242]
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| − | ** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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| − | ** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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| − | ** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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| − | ** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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| − | ** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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| − | ** [http://www.uniprot.org/uniprot/P49353 P49353]
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| − | ** [http://www.uniprot.org/uniprot/O04882 O04882]
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| − | ** [http://www.uniprot.org/uniprot/O65004 O65004]
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| − | ** [http://www.uniprot.org/uniprot/O14230 O14230]
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| − | </div>
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| − | {{#set: ec-number=ec-2.5.1.10}}
| |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: nb gene associated=2}} | + | {{#set: nb gene associated=0}} |
| − | {{#set: nb pathway associated=5}} | + | {{#set: nb pathway associated=0}} |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=manual}} |
| − | {{#set: reconstruction tool=orthofinder}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: reconstruction comment=n.a}} | + | {{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}} |
| − | {{#set: reconstruction source=bifidobacterium|plantarum|ecoli|bthetaiotaomicron}} | + | {{#set: reconstruction source=import_from_medium}} |
