Difference between revisions of "ORNITHINE-CYCLODEAMINASE-RXN"

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(Created page with "Category:reaction == Reaction RXN0-1342 == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.99.17 ec-2.4.99.17] * direction: ** left-to-right * common-name: ** trna preq1(...")
(Created page with "Category:reaction == Reaction ORNITHINE-CYCLODEAMINASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.3.1.12 ec-4.3.1.12] * direction: ** left-to-right == Reaction...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN0-1342 ==
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== Reaction ORNITHINE-CYCLODEAMINASE-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.99.17 ec-2.4.99.17]
+
** [http://enzyme.expasy.org/EC/4.3.1.12 ec-4.3.1.12]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[tRNA-with-7-aminomethyl-7-deazaguanine]][c] '''=>''' 1 [[ADENINE]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[tRNAs-containing-epoxy-quenosine]][c]
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* 1 [[L-ORNITHINE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PRO]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FISUC_RS03685]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS05575]]
 
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** Category: [[annotation]]
 
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-6700]], queuosine biosynthesis:
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* [[ORN-AMINOPENTANOATE-CAT-PWY]], L-ornithine degradation I (L-proline biosynthesis):
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** '''4''' reactions found over '''4''' reactions in the full pathway
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway):
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
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* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32156 32156]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24369 24369]
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{{#set: ec-number=ec-2.4.99.17}}
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* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00671 R00671]
 +
* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q59701 Q59701]
 +
** [http://www.uniprot.org/uniprot/P09773 P09773]
 +
** [http://www.uniprot.org/uniprot/P33728 P33728]
 +
** [http://www.uniprot.org/uniprot/O68052 O68052]
 +
** [http://www.uniprot.org/uniprot/Q9WWA2 Q9WWA2]
 +
{{#set: ec-number=ec-4.3.1.12}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea}}
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{{#set: nb gene associated=0}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=2}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}
−
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
 

Latest revision as of 11:16, 17 October 2022

Reaction ORNITHINE-CYCLODEAMINASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ORN-AMINOPENTANOATE-CAT-PWY, L-ornithine degradation I (L-proline biosynthesis):
    • 1 reactions found over 1 reactions in the full pathway
  • ARG-GLU-PWY, L-arginine degradation VII (arginase 3 pathway):
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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