Difference between revisions of "RXN-11479"

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(Created page with "Category:metabolite == Metabolite CPD-12230 == * common-name: ** a peptidoglycan with d,d cross-link (s. aureus) * inchi-key: ** rnudguzvldavga-hfxdownisa-j * molecular-we...")
(Created page with "Category:reaction == Reaction RXN-11479 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41] * dir...")
 
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[[Category:metabolite]]
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[[Category:reaction]]
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== Metabolite CPD-12230 ==
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== Reaction RXN-11479 ==
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* ec-number:
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** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
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** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
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* direction:
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** left-to-right
 
* common-name:
 
* common-name:
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** a peptidoglycan with d,d cross-link (s. aureus)
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** beta-ketoacyl-acp synthase ii
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* inchi-key:
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== Reaction formula ==
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** rnudguzvldavga-hfxdownisa-j
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* 1 [[Glutaryl-ACP-methyl-esters]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Ketopimeloyl-ACP-methyl-esters]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* molecular-weight:
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== Gene(s) associated with this reaction  ==
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** 6694.429
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* Gene: [[FSU_RS01605]]
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* smiles:
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** Category: [[annotation]]
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** cc(c)=cccc(/c)=c/ccc(/c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/ccc(\c)=c/cop([o-])(=o)op([o-])(=o)o[c@h]8([c@h](nc(=o)c)[c@@h](o[c@h](c)c(=o)n[c@@h](c)c(=o)n[c@h](ccc(=o)n[c@@h](ccccnc(cnc(cnc(cnc(cnc(c[n+])=o)=o)=o)=o)=o)c(n[c@h](c)c(n[c@@h](c(=o)[o-])c)=o)=o)c(=o)n)[c@h](o[c@h]7(o[c@h](co)[c@@h](o[c@h]6([c@h](nc(=o)c)[c@@h](o[c@h](c)c(=o)n[c@@h](c)c(=o)n[c@h](ccc(=o)n[c@@h](ccccnc(cnc(cnc(cnc(cnc(c[n+])=o)=o)=o)=o)=o)c(n[c@h](c)c(ncc(=o)ncc(ncc(=o)ncc(ncc(=o)ncccc[c@@h](c(n[c@h](c)c(n[c@@h](c(=o)[o-])c)=o)=o)nc(=o)cc[c@@h](nc(=o)[c@@h](nc(=o)[c@@h](c)o[c@@h]4([c@h](o[c@h]1(o[c@h](co)[c@@h](o)[c@h](o)[c@@h](nc(=o)c)1))[c@@h](co)o[c@h](o[c@@h]3([c@h](o)[c@@h](nc(=o)c)[c@h](o[c@@h]2([c@h](o[c@h](c)c(=o)n[c@@h](c)c(=o)n[c@h](ccc(=o)n[c@@h](ccccnc(cnc(cnc(cnc(cnc(c[n+])=o)=o)=o)=o)=o)c(n[c@h](c)c(n[c@@h](c(=o)[o-])c)=o)=o)c(=o)n)[c@@h](nc(=o)c)[c@h](o[c@h](co)2)op([o-])(=o)op([o-])(=o)occ=c(ccc=c(ccc=c(ccc=c(ccc=c(c)ccc=c(ccc=c(ccc=c(ccc=c(c)ccc=c(c)ccc=c(c)c)c)c)c)c)c)c)c))o[c@h](co)3))[c@h](nc(=o)c)4))c)c(=o)n)=o)=o)=o)=o)c(=o)n)[c@h](o[c@h]5(o[c@h](co)[c@@h](o)[c@h](o)[c@@h](nc(=o)c)5))[c@@h](co)o6))[c@h](o)[c@@h](nc(=o)c)7))[c@@h](co)o8)
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) known to consume the compound ==
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* Gene: [[FISUC_RS15210]]
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== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
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* [[RXN-11065]]
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) of unknown directionality ==
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* Gene: [[FISUC_RS15410]]
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{{#set: common-name=a peptidoglycan with d,d cross-link (s. aureus)}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=rnudguzvldavga-hfxdownisa-j}}
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: molecular-weight=6694.429}}
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* Gene: [[FSU_RS01400]]
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** Category: [[annotation]]
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Pathway(s) ==
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* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I:
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** '''11''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
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{{#set: direction=left-to-right}}
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{{#set: common-name=beta-ketoacyl-acp synthase ii}}
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{{#set: nb gene associated=4}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:16, 17 October 2022

Reaction RXN-11479

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6519, 8-amino-7-oxononanoate biosynthesis I:
    • 11 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=RXN-11479&oldid=92643"