Difference between revisions of "RXN-11479"

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(Created page with "Category:reaction == Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE6-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.3.5.1 ec-1.3.5.1] * direction: ** left-to-right * s...")
(Created page with "Category:reaction == Reaction RXN-11479 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41] * dir...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SUCCINATE-DEHYDROGENASE-UBIQUINONE6-RXN ==
+
== Reaction RXN-11479 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.5.1 ec-1.3.5.1]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
+
* common-name:
−
** fumaric hydrogenase
+
** beta-ketoacyl-acp synthase ii
−
** fumarate reduction
 
−
** fumarate dehydrogenase
 
−
** fumarate reductase
 
−
** succinate dehydrogenation
 
−
** succinic dehydrogenase
 
−
** succinate oxidation
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[SUC]][c] '''+''' 1 [[UBIQUINONE-6]][c] '''=>''' 1 [[FUM]][c] '''+''' 1 [[UBIQUINOL-30]][c]
+
* 1 [[Glutaryl-ACP-methyl-esters]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Ketopimeloyl-ACP-methyl-esters]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[FSU_RS01605]]
−
* Gene: [[FISUC_RS12535]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS12585]]
+
* Gene: [[FISUC_RS15210]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS12540]]
+
* Gene: [[FISUC_RS15410]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS12545]]
+
* Gene: [[FSU_RS01400]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS14510]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FSU_RS14555]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FSU_RS14505]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FSU_RS14515]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I:
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-1.3.5.1}}
+
{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=succinic dehydrogenase|fumarate dehydrogenase|fumarate reduction|fumaric hydrogenase|succinate dehydrogenation|fumarate reductase|succinate oxidation}}
+
{{#set: common-name=beta-ketoacyl-acp synthase ii}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
 
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:16, 17 October 2022

Reaction RXN-11479

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6519, 8-amino-7-oxononanoate biosynthesis I:
    • 11 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=RXN-11479&oldid=92643"