Difference between revisions of "PYRAMKIN-RXN"

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(Created page with "Category:metabolite == Metabolite UREA == * common-name: ** urea * inchi-key: ** xsqukjjjfzcrtk-uhfffaoysa-n * molecular-weight: ** 60.055 * smiles: ** c(=o)(n)n == Reacti...")
(Created page with "Category:reaction == Reaction PYRAMKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35] * direction: ** left-to-right * common-name: ** pyridoxami...")
 
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[[Category:metabolite]]
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[[Category:reaction]]
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== Metabolite UREA ==
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== Reaction PYRAMKIN-RXN ==
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* ec-number:
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** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35]
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* direction:
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** left-to-right
 
* common-name:
 
* common-name:
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** urea
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** pyridoxamine kinase
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* inchi-key:
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== Reaction formula ==
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** xsqukjjjfzcrtk-uhfffaoysa-n
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* 1 [[ATP]][c] '''+''' 1 [[PYRIDOXAMINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c]
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* molecular-weight:
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== Gene(s) associated with this reaction  ==
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** 60.055
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* Gene: [[FISUC_RS06730]]
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* smiles:
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** Category: [[annotation]]
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** c(=o)(n)n
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) known to consume the compound ==
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* Gene: [[FSU_RS08635]]
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* [[ARGINASE-RXN]]
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** Category: [[annotation]]
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* [[UREASE-RXN]]
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) known to produce the compound ==
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** Category: [[orthology]]
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* [[AGMATIN-RXN]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[ARGINASE-RXN]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[UREASE-RXN]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: common-name=urea}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: inchi-key=inchikey=xsqukjjjfzcrtk-uhfffaoysa-n}}
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== Pathway(s) ==
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{{#set: molecular-weight=60.055}}
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* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I:
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** '''3''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25105 25105]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02493 R02493]
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{{#set: ec-number=ec-2.7.1.35}}
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{{#set: direction=left-to-right}}
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{{#set: common-name=pyridoxamine kinase}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=2}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=ecoli|plantarum|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}

Latest revision as of 11:17, 17 October 2022

Reaction PYRAMKIN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • pyridoxamine kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants):
    • 4 reactions found over 9 reactions in the full pathway
  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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