Difference between revisions of "1.2.1.13-RXN"

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(Created page with "Category:reaction == Reaction 2PGADEHYDRAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11] * direction: ** reversible * common-name: ** phosphopy...")
(Created page with "Category:reaction == Reaction 1.2.1.13-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.13 ec-1.2.1.13] * direction: ** left-to-right == Reaction formula == * 1 [...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2PGADEHYDRAT-RXN ==
+
== Reaction 1.2.1.13-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11]
+
** [http://enzyme.expasy.org/EC/1.2.1.13 ec-1.2.1.13]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** phosphopyruvate hydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-PG]][c] '''<=>''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[DPG]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS08170]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS06275]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
−
* [[P124-PWY]], Bifidobacterium shunt:
+
** '''11''' reactions found over '''13''' reactions in the full pathway
−
** '''13''' reactions found over '''15''' reactions in the full pathway
 
−
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative):
 
−
** '''3''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation:
 
−
** '''14''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-8004]], Entner-Doudoroff pathway I:
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt:
 
−
** '''8''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV (plant cytosol):
 
−
** '''8''' reactions found over '''10''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 
−
** '''9''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY66-399]], gluconeogenesis III:
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P341-PWY]], glycolysis V (Pyrococcus):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7003]], glycerol degradation to butanol:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: added to improve flux in sugars
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10167 10167]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10298 10298]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00658 R00658]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01063 R01063]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P04764 P04764]
+
** [http://www.uniprot.org/uniprot/P09672 P09672]
−
** [http://www.uniprot.org/uniprot/P07322 P07322]
+
** [http://www.uniprot.org/uniprot/P09094 P09094]
−
** [http://www.uniprot.org/uniprot/P07323 P07323]
+
** [http://www.uniprot.org/uniprot/P12858 P12858]
−
** [http://www.uniprot.org/uniprot/P06733 P06733]
+
** [http://www.uniprot.org/uniprot/P12859 P12859]
−
** [http://www.uniprot.org/uniprot/P19140 P19140]
+
** [http://www.uniprot.org/uniprot/P12860 P12860]
−
** [http://www.uniprot.org/uniprot/P25704 P25704]
+
** [http://www.uniprot.org/uniprot/P09315 P09315]
−
** [http://www.uniprot.org/uniprot/P30575 P30575]
+
** [http://www.uniprot.org/uniprot/P25856 P25856]
−
** [http://www.uniprot.org/uniprot/P33675 P33675]
+
** [http://www.uniprot.org/uniprot/Q7M1R8 Q7M1R8]
−
** [http://www.uniprot.org/uniprot/P47647 P47647]
+
** [http://www.uniprot.org/uniprot/Q7M1R7 Q7M1R7]
−
** [http://www.uniprot.org/uniprot/Q9JU46 Q9JU46]
+
** [http://www.uniprot.org/uniprot/Q37174 Q37174]
−
** [http://www.uniprot.org/uniprot/P37869 P37869]
+
** [http://www.uniprot.org/uniprot/P30724 P30724]
−
** [http://www.uniprot.org/uniprot/Q9URB2 Q9URB2]
+
** [http://www.uniprot.org/uniprot/P80505 P80505]
−
** [http://www.uniprot.org/uniprot/Q9CIT0 Q9CIT0]
+
** [http://www.uniprot.org/uniprot/Q55245 Q55245]
−
** [http://www.uniprot.org/uniprot/Q9CHS7 Q9CHS7]
+
** [http://www.uniprot.org/uniprot/O22534 O22534]
−
** [http://www.uniprot.org/uniprot/P43806 P43806]
+
** [http://www.uniprot.org/uniprot/P50362 P50362]
−
** [http://www.uniprot.org/uniprot/P42448 P42448]
+
** [http://www.uniprot.org/uniprot/P19866 P19866]
−
** [http://www.uniprot.org/uniprot/P42848 P42848]
+
** [http://www.uniprot.org/uniprot/Q41019 Q41019]
−
** [http://www.uniprot.org/uniprot/Q05524 Q05524]
 
−
** [http://www.uniprot.org/uniprot/P42897 P42897]
 
−
** [http://www.uniprot.org/uniprot/P40370 P40370]
 
−
** [http://www.uniprot.org/uniprot/P51913 P51913]
 
−
** [http://www.uniprot.org/uniprot/P26300 P26300]
 
−
** [http://www.uniprot.org/uniprot/Q42887 Q42887]
 
−
** [http://www.uniprot.org/uniprot/P25696 P25696]
 
−
** [http://www.uniprot.org/uniprot/P00924 P00924]
 
−
** [http://www.uniprot.org/uniprot/P00925 P00925]
 
−
** [http://www.uniprot.org/uniprot/P0A6P9 P0A6P9]
 
−
** [http://www.uniprot.org/uniprot/P29201 P29201]
 
−
** [http://www.uniprot.org/uniprot/P09104 P09104]
 
−
** [http://www.uniprot.org/uniprot/P21550 P21550]
 
−
** [http://www.uniprot.org/uniprot/P08734 P08734]
 
−
** [http://www.uniprot.org/uniprot/Q7M4Y6 Q7M4Y6]
 
−
** [http://www.uniprot.org/uniprot/P15429 P15429]
 
−
** [http://www.uniprot.org/uniprot/P13929 P13929]
 
−
** [http://www.uniprot.org/uniprot/P15007 P15007]
 
−
** [http://www.uniprot.org/uniprot/P17182 P17182]
 
−
** [http://www.uniprot.org/uniprot/P17183 P17183]
 
−
** [http://www.uniprot.org/uniprot/P26301 P26301]
 
−
** [http://www.uniprot.org/uniprot/P31683 P31683]
 
−
** [http://www.uniprot.org/uniprot/Q54274 Q54274]
 
−
** [http://www.uniprot.org/uniprot/P42896 P42896]
 
−
** [http://www.uniprot.org/uniprot/Q27727 Q27727]
 
−
** [http://www.uniprot.org/uniprot/Q9UWJ5 Q9UWJ5]
 
−
** [http://www.uniprot.org/uniprot/P48285 P48285]
 
−
** [http://www.uniprot.org/uniprot/Q12007 Q12007]
 
−
** [http://www.uniprot.org/uniprot/P42222 P42222]
 
−
** [http://www.uniprot.org/uniprot/P75189 P75189]
 
−
** [http://www.uniprot.org/uniprot/P77972 P77972]
 
−
** [http://www.uniprot.org/uniprot/Q49059 Q49059]
 
−
** [http://www.uniprot.org/uniprot/P42895 P42895]
 
−
** [http://www.uniprot.org/uniprot/Q42971 Q42971]
 
−
** [http://www.uniprot.org/uniprot/Q43130 Q43130]
 
−
** [http://www.uniprot.org/uniprot/O69174 O69174]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-4.2.1.11}}
+
{{#set: ec-number=ec-1.2.1.13}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphopyruvate hydratase}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=20}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction comment=added to improve flux in sugars}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=add_expert_reactions}}
−
{{#set: reconstruction source=ecoli|plantarum|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
 

Latest revision as of 11:17, 17 October 2022

Reaction 1.2.1.13-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 11 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=1.2.1.13-RXN&oldid=93041"