Difference between revisions of "ORNDECARBOX-RXN"

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(Created page with "Category:reaction == Reaction METHYLENETHFDEHYDROG-NADP-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.5.1.5 ec-1.5.1.5] * direction: ** reversible * common-name: *...")
(Created page with "Category:reaction == Reaction ORNDECARBOX-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.17 ec-4.1.1.17] * direction: ** left-to-right == Reaction formula == *...")
 
(2 intermediate revisions by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHYLENETHFDEHYDROG-NADP-RXN ==
+
== Reaction ORNDECARBOX-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.5.1.5 ec-1.5.1.5]
+
** [http://enzyme.expasy.org/EC/4.1.1.17 ec-4.1.1.17]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[NADPH]][c]
+
* 1 [[L-ORNITHINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PUTRESCINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS09440]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS07515]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2201]], folate transformations I:
+
* [[ORNDEG-PWY]], superpathway of ornithine degradation:
−
** '''9''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-3841]], folate transformations II:
+
* [[PWY-46]], putrescine biosynthesis III:
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate:
+
* [[PWY-6305]], putrescine biosynthesis IV:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway):
 
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''8''' reactions found over '''24''' reactions in the full pathway
 
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22815 22815]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22965 22965]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01220 R01220]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00670 R00670]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09440 P09440]
+
** [http://www.uniprot.org/uniprot/P24169 P24169]
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
+
** [http://www.uniprot.org/uniprot/P27121 P27121]
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
+
** [http://www.uniprot.org/uniprot/P27116 P27116]
−
** [http://www.uniprot.org/uniprot/P44313 P44313]
+
** [http://www.uniprot.org/uniprot/P27120 P27120]
−
** [http://www.uniprot.org/uniprot/P47259 P47259]
+
** [http://www.uniprot.org/uniprot/P43099 P43099]
−
** [http://www.uniprot.org/uniprot/P54382 P54382]
+
** [http://www.uniprot.org/uniprot/Q9X2I6 Q9X2I6]
−
** [http://www.uniprot.org/uniprot/O67736 O67736]
+
** [http://www.uniprot.org/uniprot/P08432 P08432]
−
** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9]
+
** [http://www.uniprot.org/uniprot/P27118 P27118]
−
** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68]
+
** [http://www.uniprot.org/uniprot/P11926 P11926]
−
** [http://www.uniprot.org/uniprot/P24186 P24186]
+
** [http://www.uniprot.org/uniprot/P14019 P14019]
−
** [http://www.uniprot.org/uniprot/Q60006 Q60006]
+
** [http://www.uniprot.org/uniprot/P00860 P00860]
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
+
** [http://www.uniprot.org/uniprot/P09057 P09057]
−
** [http://www.uniprot.org/uniprot/P51696 P51696]
+
** [http://www.uniprot.org/uniprot/Q9TZZ6 Q9TZZ6]
−
** [http://www.uniprot.org/uniprot/O65269 O65269]
+
** [http://www.uniprot.org/uniprot/P44317 P44317]
−
** [http://www.uniprot.org/uniprot/O65271 O65271]
+
** [http://www.uniprot.org/uniprot/O66940 O66940]
−
** [http://www.uniprot.org/uniprot/O68031 O68031]
+
** [http://www.uniprot.org/uniprot/P27119 P27119]
−
** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0]
+
** [http://www.uniprot.org/uniprot/P49725 P49725]
−
** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6]
+
** [http://www.uniprot.org/uniprot/P50134 P50134]
 +
** [http://www.uniprot.org/uniprot/P93351 P93351]
 +
** [http://www.uniprot.org/uniprot/P93357 P93357]
 +
** [http://www.uniprot.org/uniprot/O15696 O15696]
 +
** [http://www.uniprot.org/uniprot/Q84527 Q84527]
 +
** [http://www.uniprot.org/uniprot/P41931 P41931]
 +
** [http://www.uniprot.org/uniprot/O69865 O69865]
 +
** [http://www.uniprot.org/uniprot/Q9UQW9 Q9UQW9]
 
</div>
 
</div>
−
{{#set: ec-number=ec-1.5.1.5}}
+
{{#set: ec-number=ec-4.1.1.17}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb pathway associated=7}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}
−
{{#set: reconstruction source=genome}}
 

Latest revision as of 11:18, 17 October 2022

Reaction ORNDECARBOX-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ORNDEG-PWY, superpathway of ornithine degradation:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-46, putrescine biosynthesis III:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6305, putrescine biosynthesis IV:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=ORNDECARBOX-RXN&oldid=93273"