Difference between revisions of "FISUC RS09490"

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(Created page with "Category:reaction == Reaction RXN-2043 == * ec-number: ** [http://enzyme.expasy.org/EC/3.2.1.4 ec-3.2.1.4] * direction: ** left-to-right * common-name: ** endoglucanase **...")
(Created page with "Category:gene == Gene FISUC_RS09490 == * common-name: ** mrda * transcription-direction: ** positive * centisome-position: ** 61.011154 * left-end-position: ** 2344436...")
 
(14 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN-2043 ==
+
== Gene FISUC_RS09490 ==
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.2.1.4 ec-3.2.1.4]
 
−
* direction:
 
−
** left-to-right
 
 
* common-name:
 
* common-name:
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** endoglucanase
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** mrda
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** cellulase
+
* transcription-direction:
−
** glycosyl hydrolase family 5
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** positive
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** glycoside hydrolase
+
* centisome-position:
−
** endo-1,4-beta-glucanase
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** 61.011154   
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** carbohydrate-binding protein
+
* left-end-position:
−
== Reaction formula ==
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** 2344436
−
* 1 [[CELLULOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[Cellodextrins]][c]
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* right-end-position:
−
== Gene(s) associated with this reaction  ==
+
** 2346283
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[FISUC_RS11210]]
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* [[3.4.16.4-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FISUC_RS14460]]
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* [[3.4.17.8-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FISUC_RS00285]]
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* [[RXN-11065]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS13175]]
+
* [[RXN-11302]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS13840]]
+
* [[RXN-11351]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS13620]]
+
* [[RXN-16649]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS11205]]
+
* [[RXN-16659]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS09585]]
+
* [[RXN-19249]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS02155]]
+
* [[RXN-19253]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS01825]]
+
* [[RXN-19256]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS09265]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FSU_RS00650]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS11650]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FISUC_RS07660]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS15630]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
−
== Pathway(s)  ==
 
−
* [[PWY-6788]], cellulose degradation II (fungi):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
== Reconstruction information  ==
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
== External links  ==
 
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O64949 O64949]
 
−
** [http://www.uniprot.org/uniprot/O64402 O64402]
 
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** [http://www.uniprot.org/uniprot/O59943 O59943]
 
−
** [http://www.uniprot.org/uniprot/P22503 P22503]
 
−
** [http://www.uniprot.org/uniprot/O50014 O50014]
 
−
** [http://www.uniprot.org/uniprot/O50013 O50013]
 
−
** [http://www.uniprot.org/uniprot/O50012 O50012]
 
−
** [http://www.uniprot.org/uniprot/O50011 O50011]
 
−
** [http://www.uniprot.org/uniprot/O64401 O64401]
 
−
** [http://www.uniprot.org/uniprot/O23954 O23954]
 
−
** [http://www.uniprot.org/uniprot/O22298 O22298]
 
−
** [http://www.uniprot.org/uniprot/O22297 O22297]
 
−
** [http://www.uniprot.org/uniprot/O04890 O04890]
 
−
** [http://www.uniprot.org/uniprot/Q39848 Q39848]
 
−
** [http://www.uniprot.org/uniprot/Q39847 Q39847]
 
−
** [http://www.uniprot.org/uniprot/O04972 O04972]
 
−
** [http://www.uniprot.org/uniprot/Q41012 Q41012]
 
−
** [http://www.uniprot.org/uniprot/Q39826 Q39826]
 
−
** [http://www.uniprot.org/uniprot/Q42872 Q42872]
 
−
** [http://www.uniprot.org/uniprot/Q42871 Q42871]
 
−
** [http://www.uniprot.org/uniprot/Q9SVJ2 Q9SVJ2]
 
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** [http://www.uniprot.org/uniprot/Q9SVJ3 Q9SVJ3]
 
−
** [http://www.uniprot.org/uniprot/Q9SVJ4 Q9SVJ4]
 
−
** [http://www.uniprot.org/uniprot/Q9SUS0 Q9SUS0]
 
−
** [http://www.uniprot.org/uniprot/Q9SZ90 Q9SZ90]
 
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** [http://www.uniprot.org/uniprot/O64890 O64890]
 
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** [http://www.uniprot.org/uniprot/O64889 O64889]
 
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** [http://www.uniprot.org/uniprot/O82513 O82513]
 
−
** [http://www.uniprot.org/uniprot/O80497 O80497]
 
−
** [http://www.uniprot.org/uniprot/O64891 O64891]
 
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** [http://www.uniprot.org/uniprot/O81416 O81416]
 
−
** [http://www.uniprot.org/uniprot/O48766 O48766]
 
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** [http://www.uniprot.org/uniprot/Q55365 Q55365]
 
−
** [http://www.uniprot.org/uniprot/Q38890 Q38890]
 
−
** [http://www.uniprot.org/uniprot/Q12665 Q12665]
 
−
** [http://www.uniprot.org/uniprot/Q43751 Q43751]
 
−
** [http://www.uniprot.org/uniprot/Q9SML6 Q9SML6]
 
−
** [http://www.uniprot.org/uniprot/Q43750 Q43750]
 
−
** [http://www.uniprot.org/uniprot/Q38817 Q38817]
 
−
** [http://www.uniprot.org/uniprot/P43317 P43317]
 
−
** [http://www.uniprot.org/uniprot/Q42875 Q42875]
 
−
** [http://www.uniprot.org/uniprot/Q42660 Q42660]
 
−
** [http://www.uniprot.org/uniprot/Q59665 Q59665]
 
−
** [http://www.uniprot.org/uniprot/Q59395 Q59395]
 
−
** [http://www.uniprot.org/uniprot/Q43149 Q43149]
 
−
** [http://www.uniprot.org/uniprot/Q12624 Q12624]
 
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** [http://www.uniprot.org/uniprot/P38534 P38534]
 
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** [http://www.uniprot.org/uniprot/P23666 P23666]
 
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** [http://www.uniprot.org/uniprot/P19424 P19424]
 
−
** [http://www.uniprot.org/uniprot/P07982 P07982]
 
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** [http://www.uniprot.org/uniprot/Q05156 Q05156]
 
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** [http://www.uniprot.org/uniprot/Q7M0M9 Q7M0M9]
 
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** [http://www.uniprot.org/uniprot/Q9R5L7 Q9R5L7]
 
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** [http://www.uniprot.org/uniprot/Q53302 Q53302]
 
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** [http://www.uniprot.org/uniprot/P26224 P26224]
 
−
** [http://www.uniprot.org/uniprot/P21834 P21834]
 
−
** [http://www.uniprot.org/uniprot/P21833 P21833]
 
−
** [http://www.uniprot.org/uniprot/P22669 P22669]
 
−
** [http://www.uniprot.org/uniprot/P05522 P05522]
 
−
** [http://www.uniprot.org/uniprot/P07103 P07103]
 
−
** [http://www.uniprot.org/uniprot/P10474 P10474]
 
−
** [http://www.uniprot.org/uniprot/Q46002 Q46002]
 
−
** [http://www.uniprot.org/uniprot/P16630 P16630]
 
−
** [http://www.uniprot.org/uniprot/Q59241 Q59241]
 
−
** [http://www.uniprot.org/uniprot/P13933 P13933]
 
−
** [http://www.uniprot.org/uniprot/P07985 P07985]
 
−
** [http://www.uniprot.org/uniprot/P19570 P19570]
 
−
** [http://www.uniprot.org/uniprot/P20847 P20847]
 
−
** [http://www.uniprot.org/uniprot/P23549 P23549]
 
−
** [http://www.uniprot.org/uniprot/P23550 P23550]
 
−
** [http://www.uniprot.org/uniprot/P19487 P19487]
 
−
** [http://www.uniprot.org/uniprot/P16218 P16218]
 
−
** [http://www.uniprot.org/uniprot/P23340 P23340]
 
−
** [http://www.uniprot.org/uniprot/Q01409 Q01409]
 
−
** [http://www.uniprot.org/uniprot/O67401 O67401]
 
−
** [http://www.uniprot.org/uniprot/Q7M4T4 Q7M4T4]
 
−
** [http://www.uniprot.org/uniprot/P28622 P28622]
 
−
** [http://www.uniprot.org/uniprot/P94622 P94622]
 
−
** [http://www.uniprot.org/uniprot/Q45554 Q45554]
 
−
** [http://www.uniprot.org/uniprot/Q59963 Q59963]
 
−
** [http://www.uniprot.org/uniprot/P54937 P54937]
 
−
** [http://www.uniprot.org/uniprot/Q03882 Q03882]
 
−
** [http://www.uniprot.org/uniprot/P10475 P10475]
 
−
** [http://www.uniprot.org/uniprot/P10477 P10477]
 
−
** [http://www.uniprot.org/uniprot/P04954 P04954]
 
−
** [http://www.uniprot.org/uniprot/P04956 P04956]
 
−
** [http://www.uniprot.org/uniprot/P04955 P04955]
 
−
** [http://www.uniprot.org/uniprot/Q01786 Q01786]
 
−
** [http://www.uniprot.org/uniprot/P26221 P26221]
 
−
** [http://www.uniprot.org/uniprot/P29719 P29719]
 
−
** [http://www.uniprot.org/uniprot/P06565 P06565]
 
−
** [http://www.uniprot.org/uniprot/Q59290 Q59290]
 
−
** [http://www.uniprot.org/uniprot/Q12714 Q12714]
 
−
** [http://www.uniprot.org/uniprot/P17877 P17877]
 
−
** [http://www.uniprot.org/uniprot/P29019 P29019]
 
−
** [http://www.uniprot.org/uniprot/P16216 P16216]
 
−
** [http://www.uniprot.org/uniprot/P17974 P17974]
 
−
** [http://www.uniprot.org/uniprot/P26222 P26222]
 
−
** [http://www.uniprot.org/uniprot/Q53324 Q53324]
 
−
** [http://www.uniprot.org/uniprot/Q05332 Q05332]
 
−
** [http://www.uniprot.org/uniprot/P23548 P23548]
 
−
** [http://www.uniprot.org/uniprot/P06564 P06564]
 
−
** [http://www.uniprot.org/uniprot/Q45532 Q45532]
 
−
** [http://www.uniprot.org/uniprot/P07983 P07983]
 
−
** [http://www.uniprot.org/uniprot/P07981 P07981]
 
−
** [http://www.uniprot.org/uniprot/P06566 P06566]
 
−
** [http://www.uniprot.org/uniprot/P07984 P07984]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-3.2.1.4}}
+
== Pathway(s) associated ==
−
{{#set: direction=left-to-right}}
+
* [[PWY-5265]]
−
{{#set: common-name=cellulase|glycosyl hydrolase family 5|carbohydrate-binding protein|endo-1,4-beta-glucanase|endoglucanase|glycoside hydrolase}}
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
{{#set: nb gene associated=15}}
+
* [[PWY-6471]]
−
{{#set: nb pathway associated=1}}
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
{{#set: reconstruction category=annotation}}
+
* [[PWY0-1586]]
−
{{#set: reconstruction tool=pathwaytools}}
+
** '''4''' reactions found over '''12''' reactions in the full pathway
−
{{#set: reconstruction comment=n.a}}
+
{{#set: common-name=mrda}}
−
{{#set: reconstruction source=genome}}
+
{{#set: transcription-direction=positive}}
 +
{{#set: centisome-position=61.011154    }}
 +
{{#set: left-end-position=2344436}}
 +
{{#set: right-end-position=2346283}}
 +
{{#set: organism associated=fsucgem}}
 +
{{#set: nb reaction associated=10}}
 +
{{#set: nb pathway associated=3}}

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS09490

  • common-name:
    • mrda
  • transcription-direction:
    • positive
  • centisome-position:
    • 61.011154
  • left-end-position:
    • 2344436
  • right-end-position:
    • 2346283

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5265
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6471
    • 6 reactions found over 6 reactions in the full pathway
  • PWY0-1586
    • 4 reactions found over 12 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS09490&oldid=93578"