Difference between revisions of "FISUC RS09490"

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(Created page with "Category:reaction == Reaction AICARSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3.2.2] * direction: ** reversible * common-name: ** adenylosuccinat...")
 
(Created page with "Category:gene == Gene FISUC_RS09490 == * common-name: ** mrda * transcription-direction: ** positive * centisome-position: ** 61.011154 * left-end-position: ** 2344436...")
 
(16 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction AICARSYN-RXN ==
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== Gene FISUC_RS09490 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3.2.2]
 
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** adenylosuccinate lyase
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** mrda
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== Reaction formula ==
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* transcription-direction:
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* 1 [[P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE]][c] '''<=>''' 1 [[AICAR]][c] '''+''' 1 [[FUM]][c]
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** positive
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS00540]]
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** 61.011154   
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* left-end-position:
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** 2344436
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* right-end-position:
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** 2346283
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[3.4.16.4-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[3.4.17.8-RXN]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS14350]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[RXN-11065]]
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* [[PWY-7234]], inosine-5'-phosphate biosynthesis III:
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** Category: [[annotation]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6123]], inosine-5'-phosphate biosynthesis I:
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* [[RXN-11302]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-6124]], inosine-5'-phosphate biosynthesis II:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[RXN-11351]]
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== Reconstruction information  ==
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** Category: [[annotation]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[RXN-16649]]
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* RHEA:
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* [[RXN-16659]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23923 23923]
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** Category: [[annotation]]
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* LIGAND-RXN:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.genome.jp/dbget-bin/www_bget?R04559 R04559]
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* [[RXN-19249]]
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* UNIPROT:
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** Category: [[annotation]]
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** [http://www.uniprot.org/uniprot/P21265 P21265]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.uniprot.org/uniprot/Q58339 Q58339]
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* [[RXN-19253]]
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** [http://www.uniprot.org/uniprot/Q9CF40 Q9CF40]
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** Category: [[annotation]]
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** [http://www.uniprot.org/uniprot/Q9PJ88 Q9PJ88]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.uniprot.org/uniprot/Q9JSP3 Q9JSP3]
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* [[RXN-19256]]
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** [http://www.uniprot.org/uniprot/P0AB89 P0AB89]
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** Category: [[annotation]]
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** [http://www.uniprot.org/uniprot/O65180 O65180]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.uniprot.org/uniprot/P12047 P12047]
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</div>
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{{#set: ec-number=ec-4.3.2.2}}
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== Pathway(s) associated ==
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{{#set: direction=reversible}}
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* [[PWY-5265]]
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{{#set: common-name=adenylosuccinate lyase}}
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** '''6''' reactions found over '''6''' reactions in the full pathway
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{{#set: nb gene associated=2}}
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* [[PWY-6471]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY0-1586]]
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** '''4''' reactions found over '''12''' reactions in the full pathway
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{{#set: common-name=mrda}}
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{{#set: transcription-direction=positive}}
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{{#set: centisome-position=61.011154    }}
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{{#set: left-end-position=2344436}}
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{{#set: right-end-position=2346283}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=10}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=plantarum|genome|faecalibacterium}}
 

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS09490

  • common-name:
    • mrda
  • transcription-direction:
    • positive
  • centisome-position:
    • 61.011154
  • left-end-position:
    • 2344436
  • right-end-position:
    • 2346283

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5265
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6471
    • 6 reactions found over 6 reactions in the full pathway
  • PWY0-1586
    • 4 reactions found over 12 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS09490&oldid=93578"