Difference between revisions of "FISUC RS08240"

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(Created page with "Category:reaction == Reaction RXN-14372 == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.18 ec-2.4.1.18] * direction: ** left-to-right * common-name: ** 1,4-alpha-glu...")
 
(Created page with "Category:gene == Gene FISUC_RS08240 == * common-name: ** dxs * transcription-direction: ** positive * centisome-position: ** 52.60328 * left-end-position: ** 2021352 *...")
 
(15 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
== Reaction RXN-14372 ==
+
== Gene FISUC_RS08240 ==
* ec-number:
 
** [http://enzyme.expasy.org/EC/2.4.1.18 ec-2.4.1.18]
 
* direction:
 
** left-to-right
 
 
* common-name:
 
* common-name:
** 1,4-alpha-glucan branching protein glgb
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** dxs
== Reaction formula ==
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* transcription-direction:
* n [[Alpha-Amyloses]][c] '''=>''' n [[CPD-7043]][c]
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** positive
== Gene(s) associated with this reaction  ==
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* centisome-position:
* Gene: [[FISUC_RS15575]]
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** 52.60328   
 +
* left-end-position:
 +
** 2021352
 +
* right-end-position:
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** 2023220
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
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== Reaction(s) associated ==
 +
* [[DXS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
* Gene: [[FSU_RS01770]]
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** Category: [[orthology]]
** Category: [[annotation]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
== Pathway(s) ==
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
* [[PWY-622]], starch biosynthesis:
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
** '''6''' reactions found over '''10''' reactions in the full pathway
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== Pathway(s) associated ==
== Reconstruction information  ==
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* [[PYRIDOXSYN-PWY]]
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''4''' reactions found over '''7''' reactions in the full pathway
== External links  ==
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* [[NONMEVIPP-PWY]]
{{#set: ec-number=ec-2.4.1.18}}
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** '''9''' reactions found over '''9''' reactions in the full pathway
{{#set: direction=left-to-right}}
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* [[PWY-7560]]
{{#set: common-name=1,4-alpha-glucan branching protein glgb}}
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** '''9''' reactions found over '''9''' reactions in the full pathway
{{#set: nb gene associated=2}}
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* [[PWY-6892]]
{{#set: nb pathway associated=1}}
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** '''5''' reactions found over '''7''' reactions in the full pathway
{{#set: reconstruction category=annotation}}
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* [[PWY-6891]]
{{#set: reconstruction tool=pathwaytools}}
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** '''4''' reactions found over '''7''' reactions in the full pathway
{{#set: reconstruction comment=n.a}}
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{{#set: common-name=dxs}}
{{#set: reconstruction source=genome}}
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{{#set: transcription-direction=positive}}
 +
{{#set: centisome-position=52.60328    }}
 +
{{#set: left-end-position=2021352}}
 +
{{#set: right-end-position=2023220}}
 +
{{#set: organism associated=fsucgem}}
 +
{{#set: nb reaction associated=1}}
 +
{{#set: nb pathway associated=5}}

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS08240

  • common-name:
    • dxs
  • transcription-direction:
    • positive
  • centisome-position:
    • 52.60328
  • left-end-position:
    • 2021352
  • right-end-position:
    • 2023220

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PYRIDOXSYN-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6892
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6891
    • 4 reactions found over 7 reactions in the full pathway