Difference between revisions of "FISUC RS12860"

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(Created page with "Category:reaction == Reaction PHOSGLYPHOS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.3 ec-2.7.2.3] * direction: ** reversible * common-name: ** phosphoglyce...")
(Created page with "Category:gene == Gene FISUC_RS12860 == * common-name: ** gale * transcription-direction: ** negative * centisome-position: ** 82.14137 * left-end-position: ** 3156393...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction PHOSGLYPHOS-RXN ==
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== Gene FISUC_RS12860 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.7.2.3 ec-2.7.2.3]
 
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** phosphoglycerate kinase
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** gale
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== Reaction formula ==
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* transcription-direction:
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* 1 [[ATP]][c] '''+''' 1 [[G3P]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[DPG]][c]
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** negative
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS03780]]
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** 82.14137   
 +
* left-end-position:
 +
** 3156393
 +
* right-end-position:
 +
** 3157409
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[UDPGLUCEPIM-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7344]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''1''' reactions found over '''1''' reactions in the full pathway
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-3821]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''1''' reactions found over '''3''' reactions in the full pathway
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6397]]
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* Gene: [[FISUC_RS01900]]
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** '''2''' reactions found over '''17''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-7328]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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** '''5''' reactions found over '''2''' reactions in the full pathway
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== Pathway(s) ==
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* [[PWY-6317]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[P124-PWY]], Bifidobacterium shunt:
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* [[COLANSYN-PWY]]
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** '''13''' reactions found over '''15''' reactions in the full pathway
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** '''6''' reactions found over '''1''' reactions in the full pathway
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* [[P122-PWY]], heterolactic fermentation:
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* [[PWY-6527]]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-8004]], Entner-Doudoroff pathway I:
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* [[PWY66-422]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
+
{{#set: common-name=gale}}
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** '''10''' reactions found over '''12''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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* [[PWY-1042]], glycolysis IV (plant cytosol):
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{{#set: centisome-position=82.14137    }}
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** '''8''' reactions found over '''10''' reactions in the full pathway
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{{#set: left-end-position=3156393}}
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* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis):
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{{#set: right-end-position=3157409}}
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** '''6''' reactions found over '''7''' reactions in the full pathway
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{{#set: organism associated=fsucgem}}
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
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{{#set: nb reaction associated=1}}
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** '''10''' reactions found over '''11''' reactions in the full pathway
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{{#set: nb pathway associated=8}}
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
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** '''11''' reactions found over '''13''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 
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** '''9''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY66-399]], gluconeogenesis III:
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[GLUCONEO-PWY]], gluconeogenesis I:
 
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** '''13''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-7003]], glycerol degradation to butanol:
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
−
== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14804 14804]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01512 R01512]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P11977 P11977]
 
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** [http://www.uniprot.org/uniprot/P09411 P09411]
 
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** [http://www.uniprot.org/uniprot/P09041 P09041]
 
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** [http://www.uniprot.org/uniprot/P07205 P07205]
 
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** [http://www.uniprot.org/uniprot/P16617 P16617]
 
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** [http://www.uniprot.org/uniprot/Q37743 Q37743]
 
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** [http://www.uniprot.org/uniprot/Q58058 Q58058]
 
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** [http://www.uniprot.org/uniprot/P56154 P56154]
 
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** [http://www.uniprot.org/uniprot/O29119 O29119]
 
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** [http://www.uniprot.org/uniprot/Q01655 Q01655]
 
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** [http://www.uniprot.org/uniprot/Q9URB3 Q9URB3]
 
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** [http://www.uniprot.org/uniprot/P47542 P47542]
 
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** [http://www.uniprot.org/uniprot/O27121 O27121]
 
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** [http://www.uniprot.org/uniprot/Q9PMQ5 Q9PMQ5]
 
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** [http://www.uniprot.org/uniprot/P40924 P40924]
 
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** [http://www.uniprot.org/uniprot/P43726 P43726]
 
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** [http://www.uniprot.org/uniprot/O66519 O66519]
 
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** [http://www.uniprot.org/uniprot/Q9JWS8 Q9JWS8]
 
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** [http://www.uniprot.org/uniprot/Q9CIW1 Q9CIW1]
 
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** [http://www.uniprot.org/uniprot/P36204 P36204]
 
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** [http://www.uniprot.org/uniprot/Q59181 Q59181]
 
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** [http://www.uniprot.org/uniprot/P50319 P50319]
 
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** [http://www.uniprot.org/uniprot/P50310 P50310]
 
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** [http://www.uniprot.org/uniprot/P51903 P51903]
 
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** [http://www.uniprot.org/uniprot/P18912 P18912]
 
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** [http://www.uniprot.org/uniprot/P41757 P41757]
 
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** [http://www.uniprot.org/uniprot/P27362 P27362]
 
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** [http://www.uniprot.org/uniprot/P24269 P24269]
 
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** [http://www.uniprot.org/uniprot/P00560 P00560]
 
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** [http://www.uniprot.org/uniprot/P25055 P25055]
 
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** [http://www.uniprot.org/uniprot/Q01604 Q01604]
 
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** [http://www.uniprot.org/uniprot/P00558 P00558]
 
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** [http://www.uniprot.org/uniprot/P07377 P07377]
 
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** [http://www.uniprot.org/uniprot/P07378 P07378]
 
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** [http://www.uniprot.org/uniprot/P14828 P14828]
 
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** [http://www.uniprot.org/uniprot/P09404 P09404]
 
−
** [http://www.uniprot.org/uniprot/P29408 P29408]
 
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** [http://www.uniprot.org/uniprot/P20972 P20972]
 
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** [http://www.uniprot.org/uniprot/P20971 P20971]
 
−
** [http://www.uniprot.org/uniprot/P24590 P24590]
 
−
** [http://www.uniprot.org/uniprot/P29409 P29409]
 
−
** [http://www.uniprot.org/uniprot/P33161 P33161]
 
−
** [http://www.uniprot.org/uniprot/P29405 P29405]
 
−
** [http://www.uniprot.org/uniprot/P50317 P50317]
 
−
** [http://www.uniprot.org/uniprot/P50315 P50315]
 
−
** [http://www.uniprot.org/uniprot/P29407 P29407]
 
−
** [http://www.uniprot.org/uniprot/P61884 P61884]
 
−
** [http://www.uniprot.org/uniprot/Q42542 Q42542]
 
−
** [http://www.uniprot.org/uniprot/P50318 P50318]
 
−
** [http://www.uniprot.org/uniprot/P46712 P46712]
 
−
** [http://www.uniprot.org/uniprot/P78018 P78018]
 
−
** [http://www.uniprot.org/uniprot/Q49073 Q49073]
 
−
** [http://www.uniprot.org/uniprot/Q42961 Q42961]
 
−
** [http://www.uniprot.org/uniprot/Q42962 Q42962]
 
−
** [http://www.uniprot.org/uniprot/O81394 O81394]
 
−
** [http://www.uniprot.org/uniprot/P41758 P41758]
 
−
** [http://www.uniprot.org/uniprot/O32756 O32756]
 
−
** [http://www.uniprot.org/uniprot/P38667 P38667]
 
−
** [http://www.uniprot.org/uniprot/P08966 P08966]
 
−
** [http://www.uniprot.org/uniprot/P08967 P08967]
 
−
** [http://www.uniprot.org/uniprot/P0A799 P0A799]
 
−
** [http://www.uniprot.org/uniprot/P09188 P09188]
 
−
** [http://www.uniprot.org/uniprot/P14228 P14228]
 
−
** [http://www.uniprot.org/uniprot/P08891 P08891]
 
−
** [http://www.uniprot.org/uniprot/P08892 P08892]
 
−
** [http://www.uniprot.org/uniprot/P08893 P08893]
 
−
** [http://www.uniprot.org/uniprot/P12782 P12782]
 
−
** [http://www.uniprot.org/uniprot/P12783 P12783]
 
−
</div>
 
−
{{#set: ec-number=ec-2.7.2.3}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=phosphoglycerate kinase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=15}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}
 

Latest revision as of 11:19, 17 October 2022

Gene FISUC_RS12860

  • common-name:
    • gale
  • transcription-direction:
    • negative
  • centisome-position:
    • 82.14137
  • left-end-position:
    • 3156393
  • right-end-position:
    • 3157409

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7344
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-3821
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6397
    • 2 reactions found over 17 reactions in the full pathway
  • PWY-7328
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-6317
    • 3 reactions found over 5 reactions in the full pathway
  • COLANSYN-PWY
    • 6 reactions found over 1 reactions in the full pathway
  • PWY-6527
    • 4 reactions found over 7 reactions in the full pathway
  • PWY66-422
    • 3 reactions found over 5 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12860&oldid=93891"