Difference between revisions of "FISUC RS15070"

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(Created page with "Category:reaction == Reaction RXN-9537 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] ** [http...")
(Created page with "Category:gene == Gene FISUC_RS15070 == * common-name: ** fabg * transcription-direction: ** negative * centisome-position: ** 96.25973 * left-end-position: ** 3698910...")
 
(12 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN-9537 ==
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== Gene FISUC_RS15070 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
−
* direction:
 
−
** left-to-right
 
 
* common-name:
 
* common-name:
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** 3-hydroxyacyl-acp dehydratase fabz
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** fabg
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* synonymous:
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* transcription-direction:
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** (3r)-hydroxymyristoyl-acp dehydratase
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** negative
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== Reaction formula ==
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* centisome-position:
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* 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
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** 96.25973   
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== Gene(s) associated with this reaction  ==
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* left-end-position:
 +
** 3698910
 +
* right-end-position:
 +
** 3699638
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[FISUC_RS14115]]
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* [[3-OXOACYL-ACP-REDUCT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS00310]]
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* [[RXN-10060]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
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* [[RXN-10655]]
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[RXN-10659]]
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* Gene: [[FSU_RS00290]]
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** Category: [[annotation]]
−
** Category: [[orthology]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[RXN-11476]]
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* Gene: [[FSU_RS01730]]
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** Category: [[annotation]]
−
** Category: [[orthology]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* [[RXN-11480]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS01735]]
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* [[RXN-13008]]
−
** Category: [[orthology]]
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** Category: [[annotation]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[RXN-16616]]
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16622]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16626]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16630]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9514]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9518]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9524]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9528]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9532]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9536]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9540]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9552]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9556]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9633]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-2142]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-157]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN1G-349]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-469]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN1G-508]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
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== Pathway(s) ==
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== Pathway(s) associated ==
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi):
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[FASYN-ELONG-PWY]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6113]]
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** '''7''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWYG-321]]
 +
** '''12''' reactions found over '''182''' reactions in the full pathway
 +
* [[PWY-6282]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6519]]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7664]]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7663]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5994]]
 
** '''20''' reactions found over '''31''' reactions in the full pathway
 
** '''20''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants):
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* [[PWY-5971]]
 
** '''22''' reactions found over '''31''' reactions in the full pathway
 
** '''22''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-7388]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5367]]
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5973]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5989]]
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== External links  ==
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** '''4''' reactions found over '''6''' reactions in the full pathway
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{{#set: ec-number=ec-2.3.1.85|ec-4.2.1.59|ec-2.3.1.86}}
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* [[PWY3O-355]]
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{{#set: direction=left-to-right}}
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** '''3''' reactions found over '''6''' reactions in the full pathway
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{{#set: common-name=3-hydroxyacyl-acp dehydratase fabz}}
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* [[PWY-7858]]
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{{#set: synonymous=(3r)-hydroxymyristoyl-acp dehydratase}}
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** '''3''' reactions found over '''6''' reactions in the full pathway
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{{#set: nb gene associated=5}}
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* [[PWY0-862]]
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{{#set: nb pathway associated=2}}
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** '''4''' reactions found over '''6''' reactions in the full pathway
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{{#set: reconstruction category=annotation|orthology}}
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</div>
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
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{{#set: common-name=fabg}}
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{{#set: reconstruction comment=n.a}}
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{{#set: transcription-direction=negative}}
−
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|genome|ecoli|faecalibacterium|plantarum}}
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{{#set: centisome-position=96.25973    }}
 +
{{#set: left-end-position=3698910}}
 +
{{#set: right-end-position=3699638}}
 +
{{#set: organism associated=fsucgem}}
 +
{{#set: nb reaction associated=26}}
 +
{{#set: nb pathway associated=16}}

Latest revision as of 11:20, 17 October 2022

Gene FISUC_RS15070

  • common-name:
    • fabg
  • transcription-direction:
    • negative
  • centisome-position:
    • 96.25973
  • left-end-position:
    • 3698910
  • right-end-position:
    • 3699638

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FASYN-ELONG-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6113
    • 7 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 12 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5973
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5989
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 3 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 4 reactions found over 6 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS15070&oldid=94002"