Difference between revisions of "FISUC RS15070"

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(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALISOM-RXN == * common-name: ** 3-isopropylmalate dehydratase * direction: ** reversible * synonymous: ** α-isopropylmalate...")
(Created page with "Category:gene == Gene FISUC_RS15070 == * common-name: ** fabg * transcription-direction: ** negative * centisome-position: ** 96.25973 * left-end-position: ** 3698910...")
 
(10 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
+
[[Category:gene]]
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== Reaction 3-ISOPROPYLMALISOM-RXN ==
+
== Gene FISUC_RS15070 ==
 
* common-name:
 
* common-name:
−
** 3-isopropylmalate dehydratase
+
** fabg
−
* direction:
+
* transcription-direction:
−
** reversible
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** negative
−
* synonymous:
+
* centisome-position:
−
** α-isopropylmalate isomerase
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** 96.25973   
−
** β-isopropylmalate dehydratase
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* left-end-position:
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** 3-isopropylmalate hydro-lyase
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** 3698910
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** (2r,3s)-3-isopropylmalate hydro-lyase
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* right-end-position:
−
== Reaction formula ==
+
** 3699638
−
* 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
+
== Organism(s) associated with this gene  ==
−
== Gene(s) associated with this reaction  ==
+
* [[fsucgem]]
 +
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[FSU_RS02215]]
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* [[3-OXOACYL-ACP-REDUCT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
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* [[RXN-10060]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS02210]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-10655]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS00345]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FISUC_RS00340]]
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* [[RXN-10659]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11476]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11480]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13008]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16616]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16622]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16626]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16630]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9514]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9518]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9524]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9528]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9532]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9536]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9540]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9552]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9556]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9633]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-2142]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-157]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-349]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-469]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-508]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
−
== Pathway(s) ==
+
== Pathway(s) associated ==
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[LEUSYN-PWY]], L-leucine biosynthesis:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
== Reconstruction information  ==
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
== External links  ==
 
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
+
* [[FASYN-ELONG-PWY]]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16296 16296]
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* LIGAND-RXN:
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* [[PWY-6113]]
−
** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
+
** '''7''' reactions found over '''4''' reactions in the full pathway
−
* UNIPROT:
+
* [[PWYG-321]]
−
** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
+
** '''12''' reactions found over '''182''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
+
* [[PWY-6282]]
−
** [http://www.uniprot.org/uniprot/P80858 P80858]
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
+
* [[PWY-6519]]
−
** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
+
** '''11''' reactions found over '''11''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q58673 Q58673]
+
* [[PWY-7664]]
−
** [http://www.uniprot.org/uniprot/Q02144 Q02144]
+
** '''10''' reactions found over '''14''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P44968 P44968]
+
* [[PWY-7663]]
−
** [http://www.uniprot.org/uniprot/Q58667 Q58667]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P44438 P44438]
+
* [[PWY-5994]]
−
** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
+
** '''20''' reactions found over '''31''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
+
* [[PWY-5971]]
−
** [http://www.uniprot.org/uniprot/Q44022 Q44022]
+
** '''22''' reactions found over '''31''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q44023 Q44023]
+
* [[PWY-7388]]
−
** [http://www.uniprot.org/uniprot/Q44427 Q44427]
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P17279 P17279]
+
* [[PWY-5367]]
−
** [http://www.uniprot.org/uniprot/P04787 P04787]
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P15717 P15717]
+
* [[PWY-5973]]
−
** [http://www.uniprot.org/uniprot/P18250 P18250]
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q02142 Q02142]
+
* [[PWY-5989]]
−
** [http://www.uniprot.org/uniprot/P30126 P30126]
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P50181 P50181]
+
* [[PWY3O-355]]
−
** [http://www.uniprot.org/uniprot/P07264 P07264]
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P74207 P74207]
+
* [[PWY-7858]]
−
** [http://www.uniprot.org/uniprot/O86534 O86534]
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/O86535 O86535]
+
* [[PWY0-862]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: common-name=3-isopropylmalate dehydratase}}
+
{{#set: common-name=fabg}}
−
{{#set: direction=reversible}}
+
{{#set: transcription-direction=negative}}
−
{{#set: synonymous=&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase|(2r,3s)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase}}
+
{{#set: centisome-position=96.25973    }}
−
{{#set: nb gene associated=4}}
+
{{#set: left-end-position=3698910}}
−
{{#set: nb pathway associated=2}}
+
{{#set: right-end-position=3699638}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: nb reaction associated=26}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: nb pathway associated=16}}
−
{{#set: reconstruction source=ecoli|faecalibacterium|bthetaiotaomicron|genome|bifidobacterium}}
 

Latest revision as of 11:20, 17 October 2022

Gene FISUC_RS15070

  • common-name:
    • fabg
  • transcription-direction:
    • negative
  • centisome-position:
    • 96.25973
  • left-end-position:
    • 3698910
  • right-end-position:
    • 3699638

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FASYN-ELONG-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6113
    • 7 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 12 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5973
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5989
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 3 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 4 reactions found over 6 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS15070&oldid=94002"