Difference between revisions of "FISUC RS15070"

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(Created page with "Category:reaction == Reaction GPPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.1 ec-2.5.1.1] * direction: ** left-to-right == Reaction formula == * 1 CPD...")
(Created page with "Category:gene == Gene FISUC_RS15070 == * common-name: ** fabg * transcription-direction: ** negative * centisome-position: ** 96.25973 * left-end-position: ** 3698910...")
 
(4 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction GPPSYN-RXN ==
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== Gene FISUC_RS15070 ==
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* ec-number:
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* common-name:
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** [http://enzyme.expasy.org/EC/2.5.1.1 ec-2.5.1.1]
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** fabg
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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== Reaction formula ==
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* centisome-position:
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* 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c]
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** 96.25973   
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== Gene(s) associated with this reaction ==
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* left-end-position:
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* Gene: [[FSU_RS10165]]
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** 3698910
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** Category: [[orthology]]
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* right-end-position:
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** 3699638
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Organism(s) associated with this gene ==
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[fsucgem]]
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Reaction(s) associated ==
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* Gene: [[FSU_RS06175]]
 
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
== Pathway(s) ==
 
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-5122]], geranyl diphosphate biosynthesis:
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* [[3-OXOACYL-ACP-REDUCT-RXN]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[RXN-10060]]
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
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** Category: [[annotation]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PWY-7410]], ipsdienol biosynthesis:
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* [[RXN-10655]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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** Category: [[annotation]]
−
* [[PWY-7659]], viridicatumtoxin biosynthesis:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-10659]]
−
* [[PWY-7709]], (3R)-linalool biosynthesis:
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** Category: [[annotation]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PWY-7141]], (3S)-linalool biosynthesis:
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* [[RXN-11476]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** Category: [[annotation]]
−
* [[PWY-6859]], all-trans-farnesol biosynthesis:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11480]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13008]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16616]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16622]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16626]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16630]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9514]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9518]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9524]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9528]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9532]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9536]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9540]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9552]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9556]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9633]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-2142]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-157]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN1G-349]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-469]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-508]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[FASYN-ELONG-PWY]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6113]]
 +
** '''7''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWYG-321]]
 +
** '''12''' reactions found over '''182''' reactions in the full pathway
 +
* [[PWY-6282]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6519]]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7664]]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7663]]
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7102]], bisabolene biosynthesis (engineered):
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* [[PWY-5994]]
 +
** '''20''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5971]]
 +
** '''22''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-7388]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5367]]
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** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5973]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5989]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]]
 
** '''3''' reactions found over '''6''' reactions in the full pathway
 
** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7182]], linalool biosynthesis I:
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* [[PWY-7858]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7736]], stellatic acid biosynthesis:
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* [[PWY0-862]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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** '''4''' reactions found over '''6''' reactions in the full pathway
−
</div>
 
−
== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
== External links  ==
 
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
 
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
 
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
 
−
** [http://www.uniprot.org/uniprot/P46376 P46376]
 
−
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
 
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
 
−
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
 
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
 
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
 
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
 
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
 
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
 
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
 
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
 
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
 
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
 
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
 
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
 
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
 
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
 
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
 
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-2.5.1.1}}
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{{#set: common-name=fabg}}
−
{{#set: direction=left-to-right}}
+
{{#set: transcription-direction=negative}}
−
{{#set: nb gene associated=2}}
+
{{#set: centisome-position=96.25973    }}
−
{{#set: nb pathway associated=11}}
+
{{#set: left-end-position=3698910}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: right-end-position=3699638}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: nb reaction associated=26}}
−
{{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|ecoli|plantarum}}
+
{{#set: nb pathway associated=16}}

Latest revision as of 11:20, 17 October 2022

Gene FISUC_RS15070

  • common-name:
    • fabg
  • transcription-direction:
    • negative
  • centisome-position:
    • 96.25973
  • left-end-position:
    • 3698910
  • right-end-position:
    • 3699638

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FASYN-ELONG-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6113
    • 7 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 12 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5973
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5989
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 3 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 4 reactions found over 6 reactions in the full pathway





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