Difference between revisions of "FISUC RS15310"

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(Created page with "Category:reaction == Reaction INORGPYROPHOSPHAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.1 ec-3.6.1.1] * direction: ** left-to-right * common-name: ** ino...")
(Created page with "Category:gene == Gene FISUC_RS15310 == * transcription-direction: ** positive * centisome-position: ** 97.68547 * left-end-position: ** 3753696 * right-end-position: *...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction INORGPYROPHOSPHAT-RXN ==
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== Gene FISUC_RS15310 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/3.6.1.1 ec-3.6.1.1]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 97.68547   
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* common-name:
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* left-end-position:
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** inorganic diphosphatase
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** 3753696
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== Reaction formula ==
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* right-end-position:
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* 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
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** 3754967
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[fsucgem]]
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* Gene: [[FSU_RS16335]]
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== Reaction(s) associated ==
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** Category: [[orthology]]
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* [[GLUTSEMIALDEHYDROG-RXN]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS10935]]
 
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** Category: [[orthology]]
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS12900]]
 
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** Category: [[orthology]]
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS03695]]
 
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** Category: [[orthology]]
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS12850]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS00900]]
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== Pathway(s) associated ==
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** Category: [[annotation]]
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* [[CITRULBIO-PWY]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* Gene: [[FSU_RS14825]]
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* [[ARGININE-SYN4-PWY]]
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** Category: [[annotation]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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* [[PWY-6922]]
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** Category: [[orthology]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-3341]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* Gene: [[FSU_RS02780]]
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* [[PROSYN-PWY]]
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** Category: [[annotation]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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{{#set: transcription-direction=positive}}
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** Category: [[orthology]]
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{{#set: centisome-position=97.68547    }}
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: left-end-position=3753696}}
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: right-end-position=3754967}}
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</div>
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{{#set: organism associated=fsucgem}}
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== Pathway(s) ==
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{{#set: nb reaction associated=1}}
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* [[PWY-7805]], (aminomethyl)phosphonate degradation:
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{{#set: nb pathway associated=5}}
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** '''2''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7807]], glyphosate degradation III:
 
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** '''2''' reactions found over '''7''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P21616 P21616]
 
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** [http://www.uniprot.org/uniprot/P31414 P31414]
 
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** [http://www.uniprot.org/uniprot/P28239 P28239]
 
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** [http://www.uniprot.org/uniprot/P37980 P37980]
 
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** [http://www.uniprot.org/uniprot/P84491 P84491]
 
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** [http://www.uniprot.org/uniprot/O59570 O59570]
 
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** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
 
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** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
 
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** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
 
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** [http://www.uniprot.org/uniprot/O26363 O26363]
 
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** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
 
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** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
 
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** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
 
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** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
 
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** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
 
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** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
 
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** [http://www.uniprot.org/uniprot/P47593 P47593]
 
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** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
 
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** [http://www.uniprot.org/uniprot/O05724 O05724]
 
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** [http://www.uniprot.org/uniprot/P19514 P19514]
 
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** [http://www.uniprot.org/uniprot/P00817 P00817]
 
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** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
 
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** [http://www.uniprot.org/uniprot/P13998 P13998]
 
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** [http://www.uniprot.org/uniprot/P19117 P19117]
 
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** [http://www.uniprot.org/uniprot/P21216 P21216]
 
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** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
 
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** [http://www.uniprot.org/uniprot/P37981 P37981]
 
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** [http://www.uniprot.org/uniprot/Q43801 Q43801]
 
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** [http://www.uniprot.org/uniprot/Q43798 Q43798]
 
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** [http://www.uniprot.org/uniprot/Q43797 Q43797]
 
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** [http://www.uniprot.org/uniprot/P50308 P50308]
 
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** [http://www.uniprot.org/uniprot/Q43796 Q43796]
 
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** [http://www.uniprot.org/uniprot/P93409 P93409]
 
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** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
 
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** [http://www.uniprot.org/uniprot/P93410 P93410]
 
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** [http://www.uniprot.org/uniprot/P75250 P75250]
 
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** [http://www.uniprot.org/uniprot/Q49071 Q49071]
 
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** [http://www.uniprot.org/uniprot/O48556 O48556]
 
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** [http://www.uniprot.org/uniprot/O22537 O22537]
 
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** [http://www.uniprot.org/uniprot/O82793 O82793]
 
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** [http://www.uniprot.org/uniprot/O23979 O23979]
 
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** [http://www.uniprot.org/uniprot/O49949 O49949]
 
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** [http://www.uniprot.org/uniprot/Q43187 Q43187]
 
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** [http://www.uniprot.org/uniprot/O22124 O22124]
 
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** [http://www.uniprot.org/uniprot/Q42650 Q42650]
 
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** [http://www.uniprot.org/uniprot/Q42651 Q42651]
 
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** [http://www.uniprot.org/uniprot/O65151 O65151]
 
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</div>
 
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{{#set: ec-number=ec-3.6.1.1}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=inorganic diphosphatase}}
 
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{{#set: nb gene associated=8}}
 
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|ecoli}}
 

Latest revision as of 11:20, 17 October 2022

Gene FISUC_RS15310

  • transcription-direction:
    • positive
  • centisome-position:
    • 97.68547
  • left-end-position:
    • 3753696
  • right-end-position:
    • 3754967

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway
  • ARGININE-SYN4-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-3341
    • 5 reactions found over 5 reactions in the full pathway
  • PROSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS15310&oldid=94316"